Results 81 - 100 of 440 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 47959 | 0.74 | 0.283541 |
Target: 5'- cCGGCGcCGGCuGgGCga-CCGCCGCGCg -3' miRNA: 3'- -GCCGCuGCCG-CgCGgaaGGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 115054 | 0.74 | 0.296131 |
Target: 5'- gCGGCgGGCGGCaGCGCCguccagUCCACgGCcucgGCg -3' miRNA: 3'- -GCCG-CUGCCG-CGCGGa-----AGGUGgCG----CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 184526 | 0.74 | 0.289782 |
Target: 5'- gCGGCG-CgGGCGaCGCCgcCCACCGcCGCc -3' miRNA: 3'- -GCCGCuG-CCGC-GCGGaaGGUGGC-GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 92008 | 0.74 | 0.283541 |
Target: 5'- aCGGCGGCaGCGCGCuCUacgagcaccuggUgCACUGCGCc -3' miRNA: 3'- -GCCGCUGcCGCGCG-GA------------AgGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 75382 | 0.74 | 0.296131 |
Target: 5'- cCGGCGGCGGCG-GCCUcUCC-CCGUc- -3' miRNA: 3'- -GCCGCUGCCGCgCGGA-AGGuGGCGcg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 55300 | 0.73 | 0.311806 |
Target: 5'- gCGGCGGCGGCGuCGCggcgggcgcgggcggCUUCCGaggacccggggUCGCGCc -3' miRNA: 3'- -GCCGCUGCCGC-GCG---------------GAAGGU-----------GGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 24032 | 0.73 | 0.322603 |
Target: 5'- uCGGCGACGGCG-GUCccuccccgUCCGCC-CGCc -3' miRNA: 3'- -GCCGCUGCCGCgCGGa-------AGGUGGcGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 14496 | 0.73 | 0.322603 |
Target: 5'- gCGGCGGCGGCccGCGCU---CGCgGCGCu -3' miRNA: 3'- -GCCGCUGCCG--CGCGGaagGUGgCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 79434 | 0.73 | 0.322603 |
Target: 5'- cCGGCGGCGGCgGCGgCgaCCGgCGCGg -3' miRNA: 3'- -GCCGCUGCCG-CGCgGaaGGUgGCGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 59261 | 0.73 | 0.334376 |
Target: 5'- uCGGCGAgcacGCGCGCCUgcuggagaUCCgcucgccgcucgacGCCGCGCa -3' miRNA: 3'- -GCCGCUgc--CGCGCGGA--------AGG--------------UGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 108195 | 0.73 | 0.329491 |
Target: 5'- -uGCGAgCGGCGCuGCg--CCGCCGCGCc -3' miRNA: 3'- gcCGCU-GCCGCG-CGgaaGGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 107258 | 0.73 | 0.34359 |
Target: 5'- uGGCccGGCGGagcCGCGCCgUCCGCCGcCGUc -3' miRNA: 3'- gCCG--CUGCC---GCGCGGaAGGUGGC-GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 8309 | 0.73 | 0.34359 |
Target: 5'- gGGCGAaGGCG-GCa--CCGCCGCGCc -3' miRNA: 3'- gCCGCUgCCGCgCGgaaGGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 101597 | 0.73 | 0.329491 |
Target: 5'- gGGgGGCGG-GUGCCggcCCGCCGgGCg -3' miRNA: 3'- gCCgCUGCCgCGCGGaa-GGUGGCgCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 188259 | 0.73 | 0.328797 |
Target: 5'- gCGGCGguaGCGGCGgGCCgggUagcggaugcagggCGCCGCGCg -3' miRNA: 3'- -GCCGC---UGCCGCgCGGaa-G-------------GUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 53596 | 0.73 | 0.30915 |
Target: 5'- uCGGCGuCGGCGUcaCCgggCCGCCGCaGCg -3' miRNA: 3'- -GCCGCuGCCGCGc-GGaa-GGUGGCG-CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 118271 | 0.73 | 0.322603 |
Target: 5'- gGGCGGCGGCgccgGCGUCggggACCGCGCc -3' miRNA: 3'- gCCGCUGCCG----CGCGGaaggUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 107058 | 0.73 | 0.329491 |
Target: 5'- aGGCGGCgGGCGCGgCg-CCGCCG-GCa -3' miRNA: 3'- gCCGCUG-CCGCGCgGaaGGUGGCgCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 84188 | 0.73 | 0.321919 |
Target: 5'- cCGGCGcuCGGCcCGCCUcCCACCaccccggGCGCg -3' miRNA: 3'- -GCCGCu-GCCGcGCGGAaGGUGG-------CGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 194159 | 0.73 | 0.333675 |
Target: 5'- -cGCGAgcccugcCGGCGCGCCUUCuccguccgcacguuCACCGcCGCg -3' miRNA: 3'- gcCGCU-------GCCGCGCGGAAG--------------GUGGC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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