miRNA display CGI


Results 41 - 60 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 49419 0.76 0.221796
Target:  5'- gCGGCGGCGGCG-GCCgucacggcgUCCGgCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCgCGGa--------AGGUgGCGCg -5'
10713 3' -62.7 NC_002794.1 + 21930 0.76 0.225359
Target:  5'- aCGGCGGCGGCGCggcgcucgucgaagGCCgUCgGCCGCu- -3'
miRNA:   3'- -GCCGCUGCCGCG--------------CGGaAGgUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 63477 0.76 0.2269
Target:  5'- aGGCGGCGGC-CGCCgucgacgaCGCCGCGg -3'
miRNA:   3'- gCCGCUGCCGcGCGGaag-----GUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 124647 0.75 0.232103
Target:  5'- uGGUgcugcaGACGGUGCGCCc-CCACUGCGUg -3'
miRNA:   3'- gCCG------CUGCCGCGCGGaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 90197 0.75 0.232103
Target:  5'- gGGC-ACGGUgcccGCGCCUccgcCCGCCGCGCc -3'
miRNA:   3'- gCCGcUGCCG----CGCGGAa---GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 32032 0.75 0.232103
Target:  5'- gCGGCGcugccgauacaGCGGCGUGUCcUCCACgGCGUu -3'
miRNA:   3'- -GCCGC-----------UGCCGCGCGGaAGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 82053 0.75 0.237406
Target:  5'- gCGGCGGCGGCGuCGUCcUCgGCCuCGCc -3'
miRNA:   3'- -GCCGCUGCCGC-GCGGaAGgUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 12707 0.75 0.237406
Target:  5'- uCGGcCGugGGCuGCGCgUUCCGCgGCGa -3'
miRNA:   3'- -GCC-GCugCCG-CGCGgAAGGUGgCGCg -5'
10713 3' -62.7 NC_002794.1 + 191681 0.75 0.237406
Target:  5'- gCGGCGGCGGCGUGCCc-UCGUCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCGCGGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 53225 0.75 0.242266
Target:  5'- gCGGCGAaacgguccguccuCGGCccgccGCGCCggcgUCGCCGCGCg -3'
miRNA:   3'- -GCCGCU-------------GCCG-----CGCGGaa--GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14680 0.75 0.242811
Target:  5'- gCGGCGGCGGuCGCGCUgcUCCugACgGCGUg -3'
miRNA:   3'- -GCCGCUGCC-GCGCGGa-AGG--UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 118178 0.75 0.252233
Target:  5'- aGGCGGCGaCGCGCCgaccuuccgucgccgCCGCCGuCGCc -3'
miRNA:   3'- gCCGCUGCcGCGCGGaa-------------GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 103928 0.75 0.253926
Target:  5'- gCGGCGAgCaGCGCGCgUggCCGCCGcCGCu -3'
miRNA:   3'- -GCCGCU-GcCGCGCGgAa-GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 46320 0.75 0.253926
Target:  5'- gCGGCGACGGCGC-Cg--UCGCCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCGcGgaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 185211 0.75 0.259639
Target:  5'- gCGGCucgcgccGCGGagaguCGCGCCgaCCGCCGCGCa -3'
miRNA:   3'- -GCCGc------UGCC-----GCGCGGaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 149980 0.75 0.259639
Target:  5'- gCGGacCGGCGGC-CGCUaUCUGCCGCGCu -3'
miRNA:   3'- -GCC--GCUGCCGcGCGGaAGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 49605 0.75 0.259639
Target:  5'- uCGGCGACGGCGgGCg--CCgGCgGCGCc -3'
miRNA:   3'- -GCCGCUGCCGCgCGgaaGG-UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 620 0.74 0.264869
Target:  5'- aGGCGGCccgguguGGCGUucGCCUcccguccCCGCCGCGCa -3'
miRNA:   3'- gCCGCUG-------CCGCG--CGGAa------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 91880 0.74 0.265456
Target:  5'- uGGCGGCGGCG-GCCgcgacgagcagUUCaCGCCGCaGCa -3'
miRNA:   3'- gCCGCUGCCGCgCGG-----------AAG-GUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 76908 0.74 0.265456
Target:  5'- aCGGCGACcaGCGCucGCgaUCCAcCCGCGCg -3'
miRNA:   3'- -GCCGCUGc-CGCG--CGgaAGGU-GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.