Results 61 - 80 of 440 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 91880 | 0.74 | 0.265456 |
Target: 5'- uGGCGGCGGCG-GCCgcgacgagcagUUCaCGCCGCaGCa -3' miRNA: 3'- gCCGCUGCCGCgCGG-----------AAG-GUGGCG-CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 58547 | 0.74 | 0.26959 |
Target: 5'- gCGGCGcgcgcgcuGCuGGCGCGCugcgcgaacgccuaCUUCCACCaGCGCg -3' miRNA: 3'- -GCCGC--------UG-CCGCGCG--------------GAAGGUGG-CGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 113868 | 0.74 | 0.271378 |
Target: 5'- cCGGCca-GGCGCGCUcggCCGCgGCGCg -3' miRNA: 3'- -GCCGcugCCGCGCGGaa-GGUGgCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 138924 | 0.74 | 0.271378 |
Target: 5'- gCGGCGGauggucugcCGGUGCGCCc-CCACCGUGg -3' miRNA: 3'- -GCCGCU---------GCCGCGCGGaaGGUGGCGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 114034 | 0.74 | 0.277406 |
Target: 5'- gGGCaGCGGC-CGCCcguagUCGCCGCGCa -3' miRNA: 3'- gCCGcUGCCGcGCGGaa---GGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 192635 | 0.74 | 0.277406 |
Target: 5'- gGGCGGCcGCuccaGCCgcgCCGCCGCGCg -3' miRNA: 3'- gCCGCUGcCGcg--CGGaa-GGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 154378 | 0.74 | 0.277406 |
Target: 5'- gCGGCGGCGGCGgGCacgCCcguUCGCGUg -3' miRNA: 3'- -GCCGCUGCCGCgCGgaaGGu--GGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 126272 | 0.74 | 0.283541 |
Target: 5'- uGGCuGGCGGCGCuggGCUUgcugUgCGCCGCGCg -3' miRNA: 3'- gCCG-CUGCCGCG---CGGA----AgGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 71315 | 0.74 | 0.283541 |
Target: 5'- gGGCGGCGaGCGCGCCaccUCgGCgGCGa -3' miRNA: 3'- gCCGCUGC-CGCGCGGa--AGgUGgCGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 92008 | 0.74 | 0.283541 |
Target: 5'- aCGGCGGCaGCGCGCuCUacgagcaccuggUgCACUGCGCc -3' miRNA: 3'- -GCCGCUGcCGCGCG-GA------------AgGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 184161 | 0.74 | 0.283541 |
Target: 5'- cCGGCGACGGCGUcuccacCCga-CACCGCGg -3' miRNA: 3'- -GCCGCUGCCGCGc-----GGaagGUGGCGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 47959 | 0.74 | 0.283541 |
Target: 5'- cCGGCGcCGGCuGgGCga-CCGCCGCGCg -3' miRNA: 3'- -GCCGCuGCCG-CgCGgaaGGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 2098 | 0.74 | 0.283541 |
Target: 5'- aCGGCGAcCGGgGCGUgUUCUAucuacgguCCGCGCc -3' miRNA: 3'- -GCCGCU-GCCgCGCGgAAGGU--------GGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 184526 | 0.74 | 0.289782 |
Target: 5'- gCGGCG-CgGGCGaCGCCgcCCACCGcCGCc -3' miRNA: 3'- -GCCGCuG-CCGC-GCGGaaGGUGGC-GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 190160 | 0.74 | 0.289782 |
Target: 5'- uGGCGGCGGCuCuCCUcgaacacCCGCCGCGCc -3' miRNA: 3'- gCCGCUGCCGcGcGGAa------GGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 58068 | 0.74 | 0.292309 |
Target: 5'- cCGGCGGCGGCgggacgggcggcccgGCGCCcgcgcUCgACCGCuGCg -3' miRNA: 3'- -GCCGCUGCCG---------------CGCGGa----AGgUGGCG-CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 62501 | 0.74 | 0.294852 |
Target: 5'- aCGGCgGGCGGCGcCGCCggcgccuccgcCCACCGUGa -3' miRNA: 3'- -GCCG-CUGCCGC-GCGGaa---------GGUGGCGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 66745 | 0.74 | 0.296131 |
Target: 5'- uGGCGGCGGCGCGUa--CgACCGCu- -3' miRNA: 3'- gCCGCUGCCGCGCGgaaGgUGGCGcg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 115054 | 0.74 | 0.296131 |
Target: 5'- gCGGCgGGCGGCaGCGCCguccagUCCACgGCcucgGCg -3' miRNA: 3'- -GCCG-CUGCCG-CGCGGa-----AGGUGgCG----CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 100452 | 0.74 | 0.296131 |
Target: 5'- uGaGCGGCGGCgGCGCCUUCC-CgGUGg -3' miRNA: 3'- gC-CGCUGCCG-CGCGGAAGGuGgCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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