miRNA display CGI


Results 81 - 100 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 115054 0.74 0.296131
Target:  5'- gCGGCgGGCGGCaGCGCCguccagUCCACgGCcucgGCg -3'
miRNA:   3'- -GCCG-CUGCCG-CGCGGa-----AGGUGgCG----CG- -5'
10713 3' -62.7 NC_002794.1 + 187464 0.74 0.300638
Target:  5'- uCGGCGucgcuCGGCGCGCg--CCgggccgaggacgagGCCGCGCa -3'
miRNA:   3'- -GCCGCu----GCCGCGCGgaaGG--------------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 31333 0.74 0.302587
Target:  5'- uCGGCu-CGGCGCccGCCgugUCCGCCGCccGCu -3'
miRNA:   3'- -GCCGcuGCCGCG--CGGa--AGGUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 100824 0.74 0.302587
Target:  5'- gGGCGGCGGgG-GCCggcagccgggcUUCCgcACCGCGCa -3'
miRNA:   3'- gCCGCUGCCgCgCGG-----------AAGG--UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 29211 0.74 0.302587
Target:  5'- cCGGCGGuCGGCG-GCCgucggCCGCCGaGCa -3'
miRNA:   3'- -GCCGCU-GCCGCgCGGaa---GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 53596 0.73 0.30915
Target:  5'- uCGGCGuCGGCGUcaCCgggCCGCCGCaGCg -3'
miRNA:   3'- -GCCGCuGCCGCGc-GGaa-GGUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 55300 0.73 0.311806
Target:  5'- gCGGCGGCGGCGuCGCggcgggcgcgggcggCUUCCGaggacccggggUCGCGCc -3'
miRNA:   3'- -GCCGCUGCCGC-GCG---------------GAAGGU-----------GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 75651 0.73 0.315822
Target:  5'- aCGaGCGGCaGCgGCGCCgUCCGCCGCu- -3'
miRNA:   3'- -GC-CGCUGcCG-CGCGGaAGGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 84188 0.73 0.321919
Target:  5'- cCGGCGcuCGGCcCGCCUcCCACCaccccggGCGCg -3'
miRNA:   3'- -GCCGCu-GCCGcGCGGAaGGUGG-------CGCG- -5'
10713 3' -62.7 NC_002794.1 + 79434 0.73 0.322603
Target:  5'- cCGGCGGCGGCgGCGgCgaCCGgCGCGg -3'
miRNA:   3'- -GCCGCUGCCG-CGCgGaaGGUgGCGCg -5'
10713 3' -62.7 NC_002794.1 + 38486 0.73 0.322603
Target:  5'- gGGCGgaggaagcGCGGCgGCGCCggUCGCCGcCGCc -3'
miRNA:   3'- gCCGC--------UGCCG-CGCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 24032 0.73 0.322603
Target:  5'- uCGGCGACGGCG-GUCccuccccgUCCGCC-CGCc -3'
miRNA:   3'- -GCCGCUGCCGCgCGGa-------AGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 118271 0.73 0.322603
Target:  5'- gGGCGGCGGCgccgGCGUCggggACCGCGCc -3'
miRNA:   3'- gCCGCUGCCG----CGCGGaaggUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14496 0.73 0.322603
Target:  5'- gCGGCGGCGGCccGCGCU---CGCgGCGCu -3'
miRNA:   3'- -GCCGCUGCCG--CGCGGaagGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 188259 0.73 0.328797
Target:  5'- gCGGCGguaGCGGCGgGCCgggUagcggaugcagggCGCCGCGCg -3'
miRNA:   3'- -GCCGC---UGCCGCgCGGaa-G-------------GUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 101597 0.73 0.329491
Target:  5'- gGGgGGCGG-GUGCCggcCCGCCGgGCg -3'
miRNA:   3'- gCCgCUGCCgCGCGGaa-GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 108195 0.73 0.329491
Target:  5'- -uGCGAgCGGCGCuGCg--CCGCCGCGCc -3'
miRNA:   3'- gcCGCU-GCCGCG-CGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 107058 0.73 0.329491
Target:  5'- aGGCGGCgGGCGCGgCg-CCGCCG-GCa -3'
miRNA:   3'- gCCGCUG-CCGCGCgGaaGGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 194159 0.73 0.333675
Target:  5'- -cGCGAgcccugcCGGCGCGCCUUCuccguccgcacguuCACCGcCGCg -3'
miRNA:   3'- gcCGCU-------GCCGCGCGGAAG--------------GUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 59261 0.73 0.334376
Target:  5'- uCGGCGAgcacGCGCGCCUgcuggagaUCCgcucgccgcucgacGCCGCGCa -3'
miRNA:   3'- -GCCGCUgc--CGCGCGGA--------AGG--------------UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.