miRNA display CGI


Results 101 - 120 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 106994 0.73 0.339315
Target:  5'- gCGGUGGCGGCGCugGCCgacgcgacggugcUCACCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCG--CGGaa-----------GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 59221 0.73 0.34359
Target:  5'- uCGGCcGCGGCGCGCgagcuCUUCgCGCUGCuGCc -3'
miRNA:   3'- -GCCGcUGCCGCGCG-----GAAG-GUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 107258 0.73 0.34359
Target:  5'- uGGCccGGCGGagcCGCGCCgUCCGCCGcCGUc -3'
miRNA:   3'- gCCG--CUGCC---GCGCGGaAGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 8309 0.73 0.34359
Target:  5'- gGGCGAaGGCG-GCa--CCGCCGCGCc -3'
miRNA:   3'- gCCGCUgCCGCgCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 65361 0.73 0.34359
Target:  5'- gGGCGcCGGCGC-CCUgacgCCACacgGCGCc -3'
miRNA:   3'- gCCGCuGCCGCGcGGAa---GGUGg--CGCG- -5'
10713 3' -62.7 NC_002794.1 + 116142 0.73 0.34359
Target:  5'- gCGGCGGCGGCcaGgGCCUg-CACCGCc- -3'
miRNA:   3'- -GCCGCUGCCG--CgCGGAagGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 103788 0.72 0.350801
Target:  5'- cCGGCGGCugagcuugaGGUGCGCCUgcgaCgGCgGCGCc -3'
miRNA:   3'- -GCCGCUG---------CCGCGCGGAa---GgUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 15271 0.72 0.350801
Target:  5'- uCGGCGAgCcGCGCGgCUcCCuCCGCGCg -3'
miRNA:   3'- -GCCGCU-GcCGCGCgGAaGGuGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 113098 0.72 0.350801
Target:  5'- aCGGCGGCGGCaGCuCCUg-CACCugGCGCu -3'
miRNA:   3'- -GCCGCUGCCG-CGcGGAagGUGG--CGCG- -5'
10713 3' -62.7 NC_002794.1 + 79007 0.72 0.355912
Target:  5'- gCGGCGAcuccaucccgcccuCGGC-CGCCUUCUGCCG-GCc -3'
miRNA:   3'- -GCCGCU--------------GCCGcGCGGAAGGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 32274 0.72 0.358119
Target:  5'- cCGGCcgaucGGCGaGCGaCGCCgccgCCGCCGCGg -3'
miRNA:   3'- -GCCG-----CUGC-CGC-GCGGaa--GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 40826 0.72 0.358119
Target:  5'- uCGGUaGAcCGGUGCGCCUgCCGaccUCGCGCu -3'
miRNA:   3'- -GCCG-CU-GCCGCGCGGAaGGU---GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 102644 0.72 0.358119
Target:  5'- cCGGCuGGCGGCGCGCUcggaggagCUGCCGaGCg -3'
miRNA:   3'- -GCCG-CUGCCGCGCGGaa------GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 72450 0.72 0.358119
Target:  5'- cCGGCGGCGcccCGCGCCcggCC-CCGCGg -3'
miRNA:   3'- -GCCGCUGCc--GCGCGGaa-GGuGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 51071 0.72 0.358119
Target:  5'- aCGGCGACcuccgagcguGGCGCGCUcggaaaagaCgACCGCGCc -3'
miRNA:   3'- -GCCGCUG----------CCGCGCGGaa-------GgUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14592 0.72 0.358119
Target:  5'- gGGCcguGGCGaGCGCGCCgggCACCGCGa -3'
miRNA:   3'- gCCG---CUGC-CGCGCGGaagGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 192440 0.72 0.36405
Target:  5'- cCGGCG-CGucGCGCGCCUcgcagucgcgcgCCACCaGCGCc -3'
miRNA:   3'- -GCCGCuGC--CGCGCGGAa-----------GGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 117668 0.72 0.364796
Target:  5'- aCGcGCGGCGGCGCguacugcacguagGCCUcgCaCGCCGCGa -3'
miRNA:   3'- -GC-CGCUGCCGCG-------------CGGAa-G-GUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 66860 0.72 0.365543
Target:  5'- gCGGCGaggccGCGGCGUGCggCUgagCCAUCGCGg -3'
miRNA:   3'- -GCCGC-----UGCCGCGCG--GAa--GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 48159 0.72 0.365543
Target:  5'- aGGCaGCGGCGC-CgCUUCaCGCCGCuGCa -3'
miRNA:   3'- gCCGcUGCCGCGcG-GAAG-GUGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.