miRNA display CGI


Results 61 - 80 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 143829 0.66 0.676766
Target:  5'- uGGCGAgCGGCcgguccgaCGCCUccggccaggcgaucgCCGCCGCGg -3'
miRNA:   3'- gCCGCU-GCCGc-------GCGGAa--------------GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 182024 0.66 0.676766
Target:  5'- cCGGCGuccgGGC-CGCCggcgaccagaccaggUCCugCGCGUa -3'
miRNA:   3'- -GCCGCug--CCGcGCGGa--------------AGGugGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 99786 0.66 0.67582
Target:  5'- cCGGCGuCGacuacgagcGCGCGCCgcgggCGCCgGCGCc -3'
miRNA:   3'- -GCCGCuGC---------CGCGCGGaag--GUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 193003 0.66 0.67582
Target:  5'- cCGGCGugugcagcgccaGCGGCGUGUacaUCUGCUGcCGCa -3'
miRNA:   3'- -GCCGC------------UGCCGCGCGga-AGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 153698 0.66 0.67582
Target:  5'- cCGGCGAcCGGUuuaGCGaCCgcgacgUCACCGaCGCc -3'
miRNA:   3'- -GCCGCU-GCCG---CGC-GGaa----GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 83050 0.66 0.67582
Target:  5'- aCGGCGGaGGacgaGCGCCcacCCACgGgCGCa -3'
miRNA:   3'- -GCCGCUgCCg---CGCGGaa-GGUGgC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 57715 0.66 0.67582
Target:  5'- uGGCGcucgagcaccuGCGGCGCGUCUacaagaaCACCGacaCGCu -3'
miRNA:   3'- gCCGC-----------UGCCGCGCGGAag-----GUGGC---GCG- -5'
10713 3' -62.7 NC_002794.1 + 186139 0.66 0.67582
Target:  5'- -aGC-ACGGCcgucaCGCCUUCCGCCuCGCc -3'
miRNA:   3'- gcCGcUGCCGc----GCGGAAGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 194018 0.66 0.674874
Target:  5'- gCGGCcgccgccGcCGGCGCcucGCCcgCCGCCGcCGCc -3'
miRNA:   3'- -GCCG-------CuGCCGCG---CGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 48749 0.67 0.666347
Target:  5'- gGGuCGAacgauCGGUuuGCGCCacauaUUCCACCaGCGCc -3'
miRNA:   3'- gCC-GCU-----GCCG--CGCGG-----AAGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 44093 0.67 0.666347
Target:  5'- gGGCaguaACGGUGCGCCgacgagCGCCGCa- -3'
miRNA:   3'- gCCGc---UGCCGCGCGGaag---GUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 56518 0.67 0.666347
Target:  5'- gGGCGcucCGGCGCucguuccggucGCCaUCCGgaGCGCu -3'
miRNA:   3'- gCCGCu--GCCGCG-----------CGGaAGGUggCGCG- -5'
10713 3' -62.7 NC_002794.1 + 70225 0.67 0.666347
Target:  5'- aCGGUcgGGCgGGCG-GCCggCCGCCcCGCa -3'
miRNA:   3'- -GCCG--CUG-CCGCgCGGaaGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 128156 0.67 0.666347
Target:  5'- -cGCGACGGCG-GCUcg-CGCCGCGg -3'
miRNA:   3'- gcCGCUGCCGCgCGGaagGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 179695 0.67 0.666347
Target:  5'- uGGCGGCGGCGaCGgUggcgaCGCCG-GCg -3'
miRNA:   3'- gCCGCUGCCGC-GCgGaag--GUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 130496 0.67 0.666347
Target:  5'- uGGCGcaGCGaGUGCGCCUcgcCCACuCGaGCg -3'
miRNA:   3'- gCCGC--UGC-CGCGCGGAa--GGUG-GCgCG- -5'
10713 3' -62.7 NC_002794.1 + 146547 0.67 0.666347
Target:  5'- -cGCGAcgaaaagcuCGGCGgGCCcgaguuccgagUCCGCCGCGg -3'
miRNA:   3'- gcCGCU---------GCCGCgCGGa----------AGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 14785 0.67 0.666347
Target:  5'- cCGGCGAggcCGGCGUGaCCgcgaccacgUCaCGCCcCGCg -3'
miRNA:   3'- -GCCGCU---GCCGCGC-GGa--------AG-GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 181542 0.67 0.666347
Target:  5'- cCGGCGGgcCGGCGCuCUcggUCGCCGgGCc -3'
miRNA:   3'- -GCCGCU--GCCGCGcGGaa-GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 15210 0.67 0.666347
Target:  5'- -cGCGAUGGCgGCGUCccCCGuCCGCGg -3'
miRNA:   3'- gcCGCUGCCG-CGCGGaaGGU-GGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.