Results 81 - 100 of 440 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 23962 | 0.67 | 0.65685 |
Target: 5'- uGGCuccgagccaGCGGCGagGCCggcgCCACCGuCGCu -3' miRNA: 3'- gCCGc--------UGCCGCg-CGGaa--GGUGGC-GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 186838 | 0.67 | 0.65685 |
Target: 5'- aGGCgcccGACaGCGCGCgggcgCUGCCGUGCa -3' miRNA: 3'- gCCG----CUGcCGCGCGgaa--GGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 183599 | 0.67 | 0.65685 |
Target: 5'- gGGCGGaggggggcCGcGCGCgGCCggcgCCcCCGCGCc -3' miRNA: 3'- gCCGCU--------GC-CGCG-CGGaa--GGuGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 117081 | 0.67 | 0.65685 |
Target: 5'- aCGGCGgcaGCGGCGUGUccaCUUCgGCCGaCa- -3' miRNA: 3'- -GCCGC---UGCCGCGCG---GAAGgUGGC-Gcg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 183205 | 0.67 | 0.65685 |
Target: 5'- aCGcCGGCGGCGCGUUcgUCGCCaGCGa -3' miRNA: 3'- -GCcGCUGCCGCGCGGaaGGUGG-CGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 115298 | 0.67 | 0.65685 |
Target: 5'- aCGGgGACcGCuGCGCCgccgUCCgcacggucGCCGCGg -3' miRNA: 3'- -GCCgCUGcCG-CGCGGa---AGG--------UGGCGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 102470 | 0.67 | 0.65685 |
Target: 5'- gCGGCGcguCGGCGUGCCg---GCCG-GCu -3' miRNA: 3'- -GCCGCu--GCCGCGCGGaaggUGGCgCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 37767 | 0.67 | 0.65685 |
Target: 5'- cCGGCGggaGCGGC-CGUCgucgUCgGCCGCagGCg -3' miRNA: 3'- -GCCGC---UGCCGcGCGGa---AGgUGGCG--CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 125825 | 0.67 | 0.65685 |
Target: 5'- -uGCGuccuCGGCGC-CCUgCUGCUGCGCu -3' miRNA: 3'- gcCGCu---GCCGCGcGGAaGGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 190512 | 0.67 | 0.65685 |
Target: 5'- aCGGCGugcccaGCcGCGUGCCgaucgucgUCCACCaGCGg -3' miRNA: 3'- -GCCGC------UGcCGCGCGGa-------AGGUGG-CGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 190646 | 0.67 | 0.65685 |
Target: 5'- cCGGCGugugcaggaucACGuCGCGC---CCGCCGCGCc -3' miRNA: 3'- -GCCGC-----------UGCcGCGCGgaaGGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 178106 | 0.67 | 0.655899 |
Target: 5'- aCGGUGuCGGgGUGCCggucguaauaaagUUUCACCGCu- -3' miRNA: 3'- -GCCGCuGCCgCGCGG-------------AAGGUGGCGcg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 93035 | 0.67 | 0.653997 |
Target: 5'- cCGGUGcGCGGCugccuggccuuccuGCucuacGCCUUCCACgaGCGCc -3' miRNA: 3'- -GCCGC-UGCCG--------------CG-----CGGAAGGUGg-CGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 187507 | 0.67 | 0.651143 |
Target: 5'- aGGCGGCcagGGCGC-CCgcggaggaacuccCCGCCGcCGCg -3' miRNA: 3'- gCCGCUG---CCGCGcGGaa-----------GGUGGC-GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 40478 | 0.67 | 0.650191 |
Target: 5'- gGGCGGCucaucgaacggccGGCGCucGCCgcucgagucacggCCGCCGaCGCg -3' miRNA: 3'- gCCGCUG-------------CCGCG--CGGaa-----------GGUGGC-GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 26736 | 0.67 | 0.647336 |
Target: 5'- -cGCGaACGGCGCGaCUUUCCugUGUa- -3' miRNA: 3'- gcCGC-UGCCGCGC-GGAAGGugGCGcg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 106396 | 0.67 | 0.647336 |
Target: 5'- gGGCGAacggucggacccCGGCgGCGCCggggCuCAUgGCGCu -3' miRNA: 3'- gCCGCU------------GCCG-CGCGGaa--G-GUGgCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 119919 | 0.67 | 0.647336 |
Target: 5'- cCGGgGACauccGCacgGCGCCgaucUCCAgCCGCGCc -3' miRNA: 3'- -GCCgCUGc---CG---CGCGGa---AGGU-GGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 13100 | 0.67 | 0.647336 |
Target: 5'- gGGgGACgaGGUGCGUUcggcggggUCGCCGCGCg -3' miRNA: 3'- gCCgCUG--CCGCGCGGaa------GGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 14458 | 0.67 | 0.647336 |
Target: 5'- gGGCGaccgugucgaGCGGCGCGCCgcgCuCGCUGUu- -3' miRNA: 3'- gCCGC----------UGCCGCGCGGaa-G-GUGGCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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