miRNA display CGI


Results 41 - 60 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 21374 0.71 0.412269
Target:  5'- gCGGCGGCGGC-CGCCgUCucuuccucggaCACCGCcgGCu -3'
miRNA:   3'- -GCCGCUGCCGcGCGGaAG-----------GUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 21591 0.72 0.380707
Target:  5'- cCGG-GGCGGUcuGUGCCcgugacCCACCGCGCc -3'
miRNA:   3'- -GCCgCUGCCG--CGCGGaa----GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 21665 0.68 0.571377
Target:  5'- gCGGUGGCGGCgGCGgUaUUCGCC-CGCu -3'
miRNA:   3'- -GCCGCUGCCG-CGCgGaAGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 21738 0.66 0.685262
Target:  5'- aGGCcgaaGCGGUGCGCCUcccUCCACgGg-- -3'
miRNA:   3'- gCCGc---UGCCGCGCGGA---AGGUGgCgcg -5'
10713 3' -62.7 NC_002794.1 + 21930 0.76 0.225359
Target:  5'- aCGGCGGCGGCGCggcgcucgucgaagGCCgUCgGCCGCu- -3'
miRNA:   3'- -GCCGCUGCCGCG--------------CGGaAGgUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 22571 0.7 0.471198
Target:  5'- aCGGC-ACGGC-CGCUgUCCAagUCGCGCu -3'
miRNA:   3'- -GCCGcUGCCGcGCGGaAGGU--GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 23925 0.69 0.552648
Target:  5'- gGGCGAgCGaGCGauccgaGCCcggCCGCgGCGCa -3'
miRNA:   3'- gCCGCU-GC-CGCg-----CGGaa-GGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 23962 0.67 0.65685
Target:  5'- uGGCuccgagccaGCGGCGagGCCggcgCCACCGuCGCu -3'
miRNA:   3'- gCCGc--------UGCCGCg-CGGaa--GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 24032 0.73 0.322603
Target:  5'- uCGGCGACGGCG-GUCccuccccgUCCGCC-CGCc -3'
miRNA:   3'- -GCCGCUGCCGCgCGGa-------AGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 26736 0.67 0.647336
Target:  5'- -cGCGaACGGCGCGaCUUUCCugUGUa- -3'
miRNA:   3'- gcCGC-UGCCGCGC-GGAAGGugGCGcg -5'
10713 3' -62.7 NC_002794.1 + 29211 0.74 0.302587
Target:  5'- cCGGCGGuCGGCG-GCCgucggCCGCCGaGCa -3'
miRNA:   3'- -GCCGCU-GCCGCgCGGaa---GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 30987 0.76 0.206593
Target:  5'- cCGGCGACGGCGgggucuuCGCCggacgUCGCCGcCGCc -3'
miRNA:   3'- -GCCGCUGCCGC-------GCGGaa---GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 31333 0.74 0.302587
Target:  5'- uCGGCu-CGGCGCccGCCgugUCCGCCGCccGCu -3'
miRNA:   3'- -GCCGcuGCCGCG--CGGa--AGGUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 31389 0.72 0.365543
Target:  5'- uCGuCGGCGGCccCGCCgcgcCCGCCGCGCc -3'
miRNA:   3'- -GCcGCUGCCGc-GCGGaa--GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 31899 0.66 0.731755
Target:  5'- -aGCGGCGcGUcgcugaugaGCGCCgacaggacgUCCAgCCGCGCc -3'
miRNA:   3'- gcCGCUGC-CG---------CGCGGa--------AGGU-GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 32032 0.75 0.232103
Target:  5'- gCGGCGcugccgauacaGCGGCGUGUCcUCCACgGCGUu -3'
miRNA:   3'- -GCCGC-----------UGCCGCGCGGaAGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 32274 0.72 0.358119
Target:  5'- cCGGCcgaucGGCGaGCGaCGCCgccgCCGCCGCGg -3'
miRNA:   3'- -GCCG-----CUGC-CGC-GCGGaa--GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 32656 0.72 0.391569
Target:  5'- gGGCGACGGCGCcguccCCgucgUCCGCCaaccguccuccggagGCGUc -3'
miRNA:   3'- gCCGCUGCCGCGc----GGa---AGGUGG---------------CGCG- -5'
10713 3' -62.7 NC_002794.1 + 33457 0.71 0.420409
Target:  5'- gGGCGGCcgccGGaCGCGCCcacgCCGCUGCaGCu -3'
miRNA:   3'- gCCGCUG----CC-GCGCGGaa--GGUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 33635 0.67 0.637811
Target:  5'- uCGuGCGGCaccgccgcacgGGCGCGCUgagcgUgCACuCGCGCu -3'
miRNA:   3'- -GC-CGCUG-----------CCGCGCGGa----AgGUG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.