miRNA display CGI


Results 61 - 80 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 34264 0.66 0.685262
Target:  5'- aGGCgGACcGCGCGCaggCgGCCaGCGCc -3'
miRNA:   3'- gCCG-CUGcCGCGCGgaaGgUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 34339 0.86 0.044363
Target:  5'- aGGCGACGGcCGCGCCgUUCCGCC-CGCu -3'
miRNA:   3'- gCCGCUGCC-GCGCGG-AAGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 34748 0.72 0.373832
Target:  5'- gCGcGCGACGGCGCGgUgggacgcggcacggCCGCCcGCGCc -3'
miRNA:   3'- -GC-CGCUGCCGCGCgGaa------------GGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 34862 0.7 0.471198
Target:  5'- gGGCGccGCGG-GCGCCgcggaCGCCGCGa -3'
miRNA:   3'- gCCGC--UGCCgCGCGGaag--GUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 35734 0.7 0.462513
Target:  5'- cCGGCGGCcGCGCGUCUcacuggcugUCCAacgaCGuCGCg -3'
miRNA:   3'- -GCCGCUGcCGCGCGGA---------AGGUg---GC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 36332 0.69 0.525834
Target:  5'- aCGGCGcgcagucgagcaaccCGGCGUGCgCggCCACCGgGUg -3'
miRNA:   3'- -GCCGCu--------------GCCGCGCG-GaaGGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 36763 0.69 0.534107
Target:  5'- uGGCgGACGGCcacccaGCuguaGCCggCCGCCGUGUa -3'
miRNA:   3'- gCCG-CUGCCG------CG----CGGaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 36910 0.67 0.628283
Target:  5'- aGGUcGCGGCGCcgGCCccgCgACCGCGg -3'
miRNA:   3'- gCCGcUGCCGCG--CGGaa-GgUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 37479 0.7 0.479965
Target:  5'- aGGaagcccuGCGGCGCGaCCagCCGCaCGCGCg -3'
miRNA:   3'- gCCgc-----UGCCGCGC-GGaaGGUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 37731 0.77 0.171879
Target:  5'- gCGaGCGGCGGCGcCGCCggCgGCgGCGCg -3'
miRNA:   3'- -GC-CGCUGCCGC-GCGGaaGgUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 37767 0.67 0.65685
Target:  5'- cCGGCGggaGCGGC-CGUCgucgUCgGCCGCagGCg -3'
miRNA:   3'- -GCCGC---UGCCGcGCGGa---AGgUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 37894 0.71 0.413079
Target:  5'- gCGGUGGCGGCGgcagcggcuCGCCggccucaacgucaaCCGCCGCGg -3'
miRNA:   3'- -GCCGCUGCCGC---------GCGGaa------------GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 38180 0.69 0.534107
Target:  5'- uCGGCGACgaaGGCGUuCCUggucucgucgUUCGCgCGCGCg -3'
miRNA:   3'- -GCCGCUG---CCGCGcGGA----------AGGUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 38438 0.69 0.547064
Target:  5'- gCGGCGGgccggacugaggagcCGGCGCGg---CCGCgGCGCg -3'
miRNA:   3'- -GCCGCU---------------GCCGCGCggaaGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 38486 0.73 0.322603
Target:  5'- gGGCGgaggaagcGCGGCgGCGCCggUCGCCGcCGCc -3'
miRNA:   3'- gCCGC--------UGCCG-CGCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 39553 0.69 0.552648
Target:  5'- gCGGCcucuGCGGCGC-CCUguaCC-CCGUGCu -3'
miRNA:   3'- -GCCGc---UGCCGCGcGGAa--GGuGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 40478 0.67 0.650191
Target:  5'- gGGCGGCucaucgaacggccGGCGCucGCCgcucgagucacggCCGCCGaCGCg -3'
miRNA:   3'- gCCGCUG-------------CCGCG--CGGaa-----------GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 40548 0.71 0.440334
Target:  5'- gGGcCGGCGGCaugagcuucucguucGCGCCgUCCugGCCGCGg -3'
miRNA:   3'- gCC-GCUGCCG---------------CGCGGaAGG--UGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 40826 0.72 0.358119
Target:  5'- uCGGUaGAcCGGUGCGCCUgCCGaccUCGCGCu -3'
miRNA:   3'- -GCCG-CU-GCCGCGCGGAaGGU---GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 42601 0.68 0.580801
Target:  5'- gCGGCGGCcgggaGCGgGCUcUCUcgacgACCGCGCu -3'
miRNA:   3'- -GCCGCUGc----CGCgCGGaAGG-----UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.