miRNA display CGI


Results 81 - 100 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 43170 0.67 0.636858
Target:  5'- uCGGCGACGgaauagcgguugcGCGCGCCgaCCgggaagguGgCGUGCg -3'
miRNA:   3'- -GCCGCUGC-------------CGCGCGGaaGG--------UgGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 44093 0.67 0.666347
Target:  5'- gGGCaguaACGGUGCGCCgacgagCGCCGCa- -3'
miRNA:   3'- gCCGc---UGCCGCGCGGaag---GUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 44274 0.66 0.693727
Target:  5'- cCGGgGACGGaggagucCGCGCCcgCCggGCCG-GCg -3'
miRNA:   3'- -GCCgCUGCC-------GCGCGGaaGG--UGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 44352 0.66 0.694666
Target:  5'- cCGGCGagaccgagagcGCGGCGgGCgCgacgUCCGCgacgcucgaCGCGCc -3'
miRNA:   3'- -GCCGC-----------UGCCGCgCG-Ga---AGGUG---------GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 44555 0.71 0.393923
Target:  5'- cCGGCGGCGGCGC-CCguugacgUcacgcgggaccgagCCACCGcCGCc -3'
miRNA:   3'- -GCCGCUGCCGCGcGGa------A--------------GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 45922 0.68 0.599737
Target:  5'- gGGCGACgaGGCuCGCgCUUCC-CCGCcCg -3'
miRNA:   3'- gCCGCUG--CCGcGCG-GAAGGuGGCGcG- -5'
10713 3' -62.7 NC_002794.1 + 46320 0.75 0.253926
Target:  5'- gCGGCGACGGCGC-Cg--UCGCCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCGcGgaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 47342 0.7 0.462513
Target:  5'- -cGCGGCGGCG-GCC-UCCGgacguUCGCGCu -3'
miRNA:   3'- gcCGCUGCCGCgCGGaAGGU-----GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 47959 0.74 0.283541
Target:  5'- cCGGCGcCGGCuGgGCga-CCGCCGCGCg -3'
miRNA:   3'- -GCCGCuGCCG-CgCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 48159 0.72 0.365543
Target:  5'- aGGCaGCGGCGC-CgCUUCaCGCCGCuGCa -3'
miRNA:   3'- gCCGcUGCCGCGcG-GAAG-GUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 48222 0.66 0.685262
Target:  5'- aGGCagagcaGGCGGC-CGCCaucgUUCgGCCGCaGCa -3'
miRNA:   3'- gCCG------CUGCCGcGCGG----AAGgUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 48442 0.68 0.610191
Target:  5'- uGGCGGCGGCcaucgggacacaGcCGCCacgucagggcgaagCCGCCGgGCa -3'
miRNA:   3'- gCCGCUGCCG------------C-GCGGaa------------GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 48581 0.66 0.722577
Target:  5'- gGGCGagccggaggaGCGGCGCGUCg-CCGuCgGCGUc -3'
miRNA:   3'- gCCGC----------UGCCGCGCGGaaGGU-GgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 48749 0.67 0.666347
Target:  5'- gGGuCGAacgauCGGUuuGCGCCacauaUUCCACCaGCGCc -3'
miRNA:   3'- gCC-GCU-----GCCG--CGCGG-----AAGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 49020 0.69 0.515791
Target:  5'- gCGGCGGCcGCgGCGUCgUCCGgCGCGg -3'
miRNA:   3'- -GCCGCUGcCG-CGCGGaAGGUgGCGCg -5'
10713 3' -62.7 NC_002794.1 + 49419 0.76 0.221796
Target:  5'- gCGGCGGCGGCG-GCCgucacggcgUCCGgCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCgCGGa--------AGGUgGCGCg -5'
10713 3' -62.7 NC_002794.1 + 49462 0.68 0.599737
Target:  5'- uGGCGcCGcCGUGaCCggCCGCCGCGg -3'
miRNA:   3'- gCCGCuGCcGCGC-GGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 49605 0.75 0.259639
Target:  5'- uCGGCGACGGCGgGCg--CCgGCgGCGCc -3'
miRNA:   3'- -GCCGCUGCCGCgCGgaaGG-UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 49837 0.7 0.471198
Target:  5'- aGGCGA-GGCGcCGCCaUUCCGCgucggcgGCGCc -3'
miRNA:   3'- gCCGCUgCCGC-GCGG-AAGGUGg------CGCG- -5'
10713 3' -62.7 NC_002794.1 + 50734 0.66 0.713331
Target:  5'- cCGG-GGCGGC-CGCCUcgacucgcucgUCCGCCccGgGCg -3'
miRNA:   3'- -GCCgCUGCCGcGCGGA-----------AGGUGG--CgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.