miRNA display CGI


Results 101 - 120 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 50773 0.8 0.117157
Target:  5'- gCGGCGACGGCGCGUCUcggGCgGCGCc -3'
miRNA:   3'- -GCCGCUGCCGCGCGGAaggUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 51071 0.72 0.358119
Target:  5'- aCGGCGACcuccgagcguGGCGCGCUcggaaaagaCgACCGCGCc -3'
miRNA:   3'- -GCCGCUG----------CCGCGCGGaa-------GgUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 51386 0.79 0.132238
Target:  5'- cCGGCGACaGGCGC-CCUccgggCuCACCGCGCa -3'
miRNA:   3'- -GCCGCUG-CCGCGcGGAa----G-GUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 52170 0.79 0.135462
Target:  5'- gCGGCGGCGGUGCGCa--UCGCCuGCGCc -3'
miRNA:   3'- -GCCGCUGCCGCGCGgaaGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 52889 0.69 0.543351
Target:  5'- uGGUGgggucgaacGCGGCGcCGCCgccgucgccgCCGCCGuCGCu -3'
miRNA:   3'- gCCGC---------UGCCGC-GCGGaa--------GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 53110 0.69 0.543351
Target:  5'- cCGGCGGuucCGGagcuCGCGUCgaCCGCgGCGCu -3'
miRNA:   3'- -GCCGCU---GCC----GCGCGGaaGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 53225 0.75 0.242266
Target:  5'- gCGGCGAaacgguccguccuCGGCccgccGCGCCggcgUCGCCGCGCg -3'
miRNA:   3'- -GCCGCU-------------GCCG-----CGCGGaa--GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 53596 0.73 0.30915
Target:  5'- uCGGCGuCGGCGUcaCCgggCCGCCGCaGCg -3'
miRNA:   3'- -GCCGCuGCCGCGc-GGaa-GGUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 53725 0.66 0.682433
Target:  5'- gGGUGGacccgcgccaucgcCGGC-CGCCgcugCCGCCGcCGCu -3'
miRNA:   3'- gCCGCU--------------GCCGcGCGGaa--GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 53902 0.68 0.571377
Target:  5'- cCGGCGGCGuccuCGuCGCCgUCgGCgGCGCc -3'
miRNA:   3'- -GCCGCUGCc---GC-GCGGaAGgUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 54242 0.72 0.388445
Target:  5'- -aGCGGcCGaGCGCGCggUCCACgGCGCc -3'
miRNA:   3'- gcCGCU-GC-CGCGCGgaAGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 54839 0.67 0.625424
Target:  5'- uCGGCGGCacccaacgcccguaGGCcgGCGCgggCCGCCGCaGCg -3'
miRNA:   3'- -GCCGCUG--------------CCG--CGCGgaaGGUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 54991 0.84 0.060041
Target:  5'- gCGGCGACGGCGgcgacuCGCCgggcgUCCGCCGcCGCg -3'
miRNA:   3'- -GCCGCUGCCGC------GCGGa----AGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 55190 0.67 0.637811
Target:  5'- aGGCGGCGGC---CCUaaCACCgGCGCg -3'
miRNA:   3'- gCCGCUGCCGcgcGGAagGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 55300 0.73 0.311806
Target:  5'- gCGGCGGCGGCGuCGCggcgggcgcgggcggCUUCCGaggacccggggUCGCGCc -3'
miRNA:   3'- -GCCGCUGCCGC-GCG---------------GAAGGU-----------GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 55648 0.72 0.368542
Target:  5'- cCGGCaGGCGcagccccgacaugguGCGCGCCUUCUGCC-CGUg -3'
miRNA:   3'- -GCCG-CUGC---------------CGCGCGGAAGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 56518 0.67 0.666347
Target:  5'- gGGCGcucCGGCGCucguuccggucGCCaUCCGgaGCGCu -3'
miRNA:   3'- gCCGCu--GCCGCG-----------CGGaAGGUggCGCG- -5'
10713 3' -62.7 NC_002794.1 + 57400 0.66 0.694666
Target:  5'- cCGGCucCGGCGC-CCgcguggCCGgCGUGCu -3'
miRNA:   3'- -GCCGcuGCCGCGcGGaa----GGUgGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 57486 0.68 0.609239
Target:  5'- aCGcGCGACcaGGUGCGCgCgcCCGCCGCc- -3'
miRNA:   3'- -GC-CGCUG--CCGCGCG-GaaGGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 57715 0.66 0.67582
Target:  5'- uGGCGcucgagcaccuGCGGCGCGUCUacaagaaCACCGacaCGCu -3'
miRNA:   3'- gCCGC-----------UGCCGCGCGGAag-----GUGGC---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.