miRNA display CGI


Results 21 - 40 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 188550 0.68 0.587416
Target:  5'- gCGGCGGCGGguacugcugccgcaCGUGCCgacacaacgcCCGCCGCu- -3'
miRNA:   3'- -GCCGCUGCC--------------GCGCGGaa--------GGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 188342 0.71 0.396286
Target:  5'- cCGGCGGCGccguCGCGCCcgUCCgGCCG-GCg -3'
miRNA:   3'- -GCCGCUGCc---GCGCGGa-AGG-UGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 188259 0.73 0.328797
Target:  5'- gCGGCGguaGCGGCGgGCCgggUagcggaugcagggCGCCGCGCg -3'
miRNA:   3'- -GCCGC---UGCCGCgCGGaa-G-------------GUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 187836 0.77 0.184403
Target:  5'- uCGGCu-CGGCGCGCCgagggcucugCCcaGCCGCGCg -3'
miRNA:   3'- -GCCGcuGCCGCGCGGaa--------GG--UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 187507 0.67 0.651143
Target:  5'- aGGCGGCcagGGCGC-CCgcggaggaacuccCCGCCGcCGCg -3'
miRNA:   3'- gCCGCUG---CCGCGcGGaa-----------GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 187464 0.74 0.300638
Target:  5'- uCGGCGucgcuCGGCGCGCg--CCgggccgaggacgagGCCGCGCa -3'
miRNA:   3'- -GCCGCu----GCCGCGCGgaaGG--------------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 186838 0.67 0.65685
Target:  5'- aGGCgcccGACaGCGCGCgggcgCUGCCGUGCa -3'
miRNA:   3'- gCCG----CUGcCGCGCGgaa--GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 186524 0.72 0.365543
Target:  5'- aGcGCGGCaccuucuccaGGCG-GCCUUCC-CCGCGCc -3'
miRNA:   3'- gC-CGCUG----------CCGCgCGGAAGGuGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 186491 0.82 0.091694
Target:  5'- gGGCccGGCGGCGCGCCUccCCGCCGUGg -3'
miRNA:   3'- gCCG--CUGCCGCGCGGAa-GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 186344 0.77 0.171879
Target:  5'- aCGGCGGCGGCGacguGCCcgaccagCCGCCGcCGCc -3'
miRNA:   3'- -GCCGCUGCCGCg---CGGaa-----GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 186284 0.71 0.404228
Target:  5'- gCGGCGGCaccgcggccaGGCG-GCCggucgCCGCgGCGCg -3'
miRNA:   3'- -GCCGCUG----------CCGCgCGGaa---GGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 186139 0.66 0.67582
Target:  5'- -aGC-ACGGCcgucaCGCCUUCCGCCuCGCc -3'
miRNA:   3'- gcCGcUGCCGc----GCGGAAGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 185765 0.69 0.552648
Target:  5'- cCGGCG-CGGC-CGCCcgucacacgUCgGCCgGCGCg -3'
miRNA:   3'- -GCCGCuGCCGcGCGGa--------AGgUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 185522 0.7 0.462513
Target:  5'- uCGGCGucAUGaCGCGCCUcaUCUcgccacccgGCCGCGCg -3'
miRNA:   3'- -GCCGC--UGCcGCGCGGA--AGG---------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 185211 0.75 0.259639
Target:  5'- gCGGCucgcgccGCGGagaguCGCGCCgaCCGCCGCGCa -3'
miRNA:   3'- -GCCGc------UGCC-----GCGCGGaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 185134 0.69 0.506728
Target:  5'- aGGCGGCGcCGCGUCgagaagaUCGCCGaCGCg -3'
miRNA:   3'- gCCGCUGCcGCGCGGaa-----GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 184580 0.76 0.21679
Target:  5'- gCGGCGGCGGCG-GCCacgcgCgGCCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCgCGGaa---GgUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 184526 0.74 0.289782
Target:  5'- gCGGCG-CgGGCGaCGCCgcCCACCGcCGCc -3'
miRNA:   3'- -GCCGCuG-CCGC-GCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 184473 0.66 0.731755
Target:  5'- cCGcGCGaACGGCGCGCggggCCccggacgcccggGCgGCGCg -3'
miRNA:   3'- -GC-CGC-UGCCGCGCGgaa-GG------------UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 184161 0.74 0.283541
Target:  5'- cCGGCGACGGCGUcuccacCCga-CACCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCGc-----GGaagGUGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.