miRNA display CGI


Results 41 - 60 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 183678 0.67 0.628283
Target:  5'- gCGcCGACGGgucgaGCGC---CCGCCGCGCg -3'
miRNA:   3'- -GCcGCUGCCg----CGCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 183599 0.67 0.65685
Target:  5'- gGGCGGaggggggcCGcGCGCgGCCggcgCCcCCGCGCc -3'
miRNA:   3'- gCCGCU--------GC-CGCG-CGGaa--GGuGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 183526 0.7 0.462513
Target:  5'- -cGCGGcCGuGCGCGCCccgUCCGCCcggggacacuGCGCg -3'
miRNA:   3'- gcCGCU-GC-CGCGCGGa--AGGUGG----------CGCG- -5'
10713 3' -62.7 NC_002794.1 + 183445 0.68 0.561991
Target:  5'- cCGGCGcccgccaccgcCGGCGC-CCgcCCGCCGCGa -3'
miRNA:   3'- -GCCGCu----------GCCGCGcGGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 183248 0.7 0.459923
Target:  5'- -cGCGGCGGCcCGCCacucggUacaguacagccagcCCACCGCGCg -3'
miRNA:   3'- gcCGCUGCCGcGCGGa-----A--------------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 183205 0.67 0.65685
Target:  5'- aCGcCGGCGGCGCGUUcgUCGCCaGCGa -3'
miRNA:   3'- -GCcGCUGCCGCGCGGaaGGUGG-CGCg -5'
10713 3' -62.7 NC_002794.1 + 183124 0.68 0.571377
Target:  5'- uCGGCGGCGGCucccguacGCGCagcUCCGCgGacaCGCg -3'
miRNA:   3'- -GCCGCUGCCG--------CGCGga-AGGUGgC---GCG- -5'
10713 3' -62.7 NC_002794.1 + 182995 0.69 0.514882
Target:  5'- cCGGCGcuucgccGCGG-GCGCC--CCGCgCGCGCc -3'
miRNA:   3'- -GCCGC-------UGCCgCGCGGaaGGUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 182255 0.66 0.713331
Target:  5'- gGaGCGACaGCGCGCCgagUCCcgaGCGg -3'
miRNA:   3'- gC-CGCUGcCGCGCGGa--AGGuggCGCg -5'
10713 3' -62.7 NC_002794.1 + 182200 0.69 0.552648
Target:  5'- uCGGCGcCGGCGuCGCg--CCACgGgGCu -3'
miRNA:   3'- -GCCGCuGCCGC-GCGgaaGGUGgCgCG- -5'
10713 3' -62.7 NC_002794.1 + 182109 0.69 0.543351
Target:  5'- gCGGUaGCGGauccgGCGCCagCCgaACCGCGCc -3'
miRNA:   3'- -GCCGcUGCCg----CGCGGaaGG--UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 182024 0.66 0.676766
Target:  5'- cCGGCGuccgGGC-CGCCggcgaccagaccaggUCCugCGCGUa -3'
miRNA:   3'- -GCCGCug--CCGcGCGGa--------------AGGugGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 181897 0.71 0.420409
Target:  5'- aGGCGACaGCGCggGUCguacaCCAcCCGCGCg -3'
miRNA:   3'- gCCGCUGcCGCG--CGGaa---GGU-GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 181768 0.71 0.436976
Target:  5'- aCGcCGAUGGCGcCGCg--CCGCCGCGUc -3'
miRNA:   3'- -GCcGCUGCCGC-GCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 181666 0.69 0.515791
Target:  5'- gCGGUGuacacguUGGUGUGCgCggaCCGCCGCGCc -3'
miRNA:   3'- -GCCGCu------GCCGCGCG-Gaa-GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 181542 0.67 0.666347
Target:  5'- cCGGCGGgcCGGCGCuCUcggUCGCCGgGCc -3'
miRNA:   3'- -GCCGCU--GCCGCGcGGaa-GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 181236 1.11 0.000798
Target:  5'- cCGGCGACGGCGCGCCUUCCACCGCGCg -3'
miRNA:   3'- -GCCGCUGCCGCGCGGAAGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 180874 0.78 0.156364
Target:  5'- gCGGCGGaucCGGCGCGCCcggUCUcgGCCGCGg -3'
miRNA:   3'- -GCCGCU---GCCGCGCGGa--AGG--UGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 180081 0.69 0.514882
Target:  5'- gCGGCGGacgguauCGGUGCGCagggCUUCCGuCCGCa- -3'
miRNA:   3'- -GCCGCU-------GCCGCGCG----GAAGGU-GGCGcg -5'
10713 3' -62.7 NC_002794.1 + 179999 0.71 0.420409
Target:  5'- -cGCGACGGCGgGCCcggCCacgacgacgGCCGCGg -3'
miRNA:   3'- gcCGCUGCCGCgCGGaa-GG---------UGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.