miRNA display CGI


Results 61 - 80 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 179695 0.67 0.666347
Target:  5'- uGGCGGCGGCGaCGgUggcgaCGCCG-GCg -3'
miRNA:   3'- gCCGCUGCCGC-GCgGaag--GUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 178106 0.67 0.655899
Target:  5'- aCGGUGuCGGgGUGCCggucguaauaaagUUUCACCGCu- -3'
miRNA:   3'- -GCCGCuGCCgCGCGG-------------AAGGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 154378 0.74 0.277406
Target:  5'- gCGGCGGCGGCGgGCacgCCcguUCGCGUg -3'
miRNA:   3'- -GCCGCUGCCGCgCGgaaGGu--GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 154326 0.68 0.580801
Target:  5'- gCGGCGuCGGUcgucccggGUGCCgcggCCGagcucCCGCGCg -3'
miRNA:   3'- -GCCGCuGCCG--------CGCGGaa--GGU-----GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 153698 0.66 0.67582
Target:  5'- cCGGCGAcCGGUuuaGCGaCCgcgacgUCACCGaCGCc -3'
miRNA:   3'- -GCCGCU-GCCG---CGC-GGaa----GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 153439 0.66 0.721655
Target:  5'- gGGCGugGacgauCGaaccgaccgagauCGuCUUUCCGCCGCGCa -3'
miRNA:   3'- gCCGCugCc----GC-------------GC-GGAAGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 153340 0.66 0.713331
Target:  5'- aCGGCGACGcGUGUugucaggacgcgGCC--CgGCUGCGCg -3'
miRNA:   3'- -GCCGCUGC-CGCG------------CGGaaGgUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 153130 0.68 0.580801
Target:  5'- uCGGUGGCGGCaGCggguccggaacgGCCUuuUUCACCGCc- -3'
miRNA:   3'- -GCCGCUGCCG-CG------------CGGA--AGGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 152583 0.71 0.428645
Target:  5'- -cGCGGCGGC-CGCCacgUCCcuGCgGCGCg -3'
miRNA:   3'- gcCGCUGCCGcGCGGa--AGG--UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 152219 0.66 0.685262
Target:  5'- aGGCGuCGGacguCGCGCg--CCACguCGCGCg -3'
miRNA:   3'- gCCGCuGCC----GCGCGgaaGGUG--GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 151583 0.81 0.098725
Target:  5'- cCGGCGGC-GCGCGCCg-CCGCCGCGg -3'
miRNA:   3'- -GCCGCUGcCGCGCGGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 150851 0.69 0.534107
Target:  5'- -aGCGGCGGcCGCGUCUacgCCuauaGCCgGCGCa -3'
miRNA:   3'- gcCGCUGCC-GCGCGGAa--GG----UGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 150061 0.7 0.471198
Target:  5'- gCGGUggGACGaGCGCgcucugGCCUUCCugCGCuggGCg -3'
miRNA:   3'- -GCCG--CUGC-CGCG------CGGAAGGugGCG---CG- -5'
10713 3' -62.7 NC_002794.1 + 149980 0.75 0.259639
Target:  5'- gCGGacCGGCGGC-CGCUaUCUGCCGCGCu -3'
miRNA:   3'- -GCC--GCUGCCGcGCGGaAGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 149711 0.66 0.704025
Target:  5'- uGGCggGugGGC-CGCCUgccucgCUACgGCGUg -3'
miRNA:   3'- gCCG--CugCCGcGCGGAa-----GGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 149668 0.68 0.609239
Target:  5'- cCGaGCGGgGGCGCGUCgcgCUcgacugGCCGCGg -3'
miRNA:   3'- -GC-CGCUgCCGCGCGGaa-GG------UGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 148642 0.7 0.488812
Target:  5'- -cGCGGCGGCGUGCUcggCUA-CGCGCc -3'
miRNA:   3'- gcCGCUGCCGCGCGGaa-GGUgGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 148519 0.68 0.591203
Target:  5'- uGGaaGCGGCuGCGCCgcuucccgugccucgUCgGCUGCGCg -3'
miRNA:   3'- gCCgcUGCCG-CGCGGa--------------AGgUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 148203 0.69 0.512158
Target:  5'- cCGGCGcCGGCGCGCgCUcgaucggucUCCGgucggcgucaccaCGCGCu -3'
miRNA:   3'- -GCCGCuGCCGCGCG-GA---------AGGUg------------GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 147980 0.71 0.428645
Target:  5'- gCGuGUGGCGGUGUcccugcugGCCUUCguCCGCGUc -3'
miRNA:   3'- -GC-CGCUGCCGCG--------CGGAAGguGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.