miRNA display CGI


Results 81 - 100 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 147694 0.68 0.580801
Target:  5'- cCGGCGGCGaugcggcgcacGUGCGCCag-UACCGCGg -3'
miRNA:   3'- -GCCGCUGC-----------CGCGCGGaagGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 147007 0.71 0.436976
Target:  5'- uCGGCGGCGGCG-GCCg-CCGgCGCu- -3'
miRNA:   3'- -GCCGCUGCCGCgCGGaaGGUgGCGcg -5'
10713 3' -62.7 NC_002794.1 + 146547 0.67 0.666347
Target:  5'- -cGCGAcgaaaagcuCGGCGgGCCcgaguuccgagUCCGCCGCGg -3'
miRNA:   3'- gcCGCU---------GCCGCgCGGa----------AGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 145894 0.68 0.571377
Target:  5'- -aGCGGCGaGCGCGaCgggggagUCgACCGCGCc -3'
miRNA:   3'- gcCGCUGC-CGCGCgGa------AGgUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 145821 0.68 0.571377
Target:  5'- cCGGCGGCGagccgaGCGCGUCgacggUCGCCaCGCu -3'
miRNA:   3'- -GCCGCUGC------CGCGCGGaa---GGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 145737 0.69 0.534107
Target:  5'- aGGCGGCGGCGcCGgCaUCgACgGCGa -3'
miRNA:   3'- gCCGCUGCCGC-GCgGaAGgUGgCGCg -5'
10713 3' -62.7 NC_002794.1 + 145394 0.7 0.471198
Target:  5'- uCGGUGGCGcgccGCGCgGCCUUaaagCGCgGCGCg -3'
miRNA:   3'- -GCCGCUGC----CGCG-CGGAAg---GUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 144968 0.71 0.412269
Target:  5'- uCGGCgccucGACGGUgucgcgaccgGCGCCgggcgUCCGCCugGCGCa -3'
miRNA:   3'- -GCCG-----CUGCCG----------CGCGGa----AGGUGG--CGCG- -5'
10713 3' -62.7 NC_002794.1 + 143829 0.66 0.676766
Target:  5'- uGGCGAgCGGCcgguccgaCGCCUccggccaggcgaucgCCGCCGCGg -3'
miRNA:   3'- gCCGCU-GCCGc-------GCGGAa--------------GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 143559 0.7 0.497734
Target:  5'- aCGGUGGCccagccguGCGCGCCgUCCucgGCgGCGCu -3'
miRNA:   3'- -GCCGCUGc-------CGCGCGGaAGG---UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 141429 0.7 0.453912
Target:  5'- gGGCGGCgGGgGCGCCgggggcgCCgggaGCgGCGCg -3'
miRNA:   3'- gCCGCUG-CCgCGCGGaa-----GG----UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 140911 0.66 0.731755
Target:  5'- uGGCGGgaccugcaGGCGCGCUg-CCugCGCa- -3'
miRNA:   3'- gCCGCUg-------CCGCGCGGaaGGugGCGcg -5'
10713 3' -62.7 NC_002794.1 + 140679 0.69 0.515791
Target:  5'- gGGCGcagguCGGUGCGacggaCCggCCGCCGCGa -3'
miRNA:   3'- gCCGCu----GCCGCGC-----GGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 140499 0.66 0.722577
Target:  5'- gGGCGcUGuacCGCGaCUUCCACCGCugGCg -3'
miRNA:   3'- gCCGCuGCc--GCGCgGAAGGUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 140187 0.69 0.506728
Target:  5'- uCGGCGACGGCGuCGUCgaggggCgACCcGgGCc -3'
miRNA:   3'- -GCCGCUGCCGC-GCGGaa----GgUGG-CgCG- -5'
10713 3' -62.7 NC_002794.1 + 138924 0.74 0.271378
Target:  5'- gCGGCGGauggucugcCGGUGCGCCc-CCACCGUGg -3'
miRNA:   3'- -GCCGCU---------GCCGCGCGGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 138440 0.78 0.156364
Target:  5'- gCGGUGGCGGCgGCGCCUcggCCugCGaCGUg -3'
miRNA:   3'- -GCCGCUGCCG-CGCGGAa--GGugGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 137618 0.67 0.628283
Target:  5'- gCGGCGGCGGUGC-CCacgacgacgUCCuggcgggcGCCGgGCc -3'
miRNA:   3'- -GCCGCUGCCGCGcGGa--------AGG--------UGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 137070 0.67 0.628283
Target:  5'- uCGGCgGGCucuucGCGCGCCaugucgcCCGCuCGCGCu -3'
miRNA:   3'- -GCCG-CUGc----CGCGCGGaa-----GGUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 136439 0.66 0.726257
Target:  5'- gCGGCGGCuGCGUccgcuguugggucagGUCggcgaggUUCGCCGCGUa -3'
miRNA:   3'- -GCCGCUGcCGCG---------------CGGa------AGGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.