miRNA display CGI


Results 41 - 60 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 31899 0.66 0.731755
Target:  5'- -aGCGGCGcGUcgcugaugaGCGCCgacaggacgUCCAgCCGCGCc -3'
miRNA:   3'- gcCGCUGC-CG---------CGCGGa--------AGGU-GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 105418 0.66 0.731755
Target:  5'- uCGGCcuccAgGGUG-GCCg-CCGCCGCGCc -3'
miRNA:   3'- -GCCGc---UgCCGCgCGGaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 90463 0.66 0.731755
Target:  5'- uCGGCGAggcCGcGCGCGgCggggCCGCCGUc- -3'
miRNA:   3'- -GCCGCU---GC-CGCGCgGaa--GGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 140911 0.66 0.731755
Target:  5'- uGGCGGgaccugcaGGCGCGCUg-CCugCGCa- -3'
miRNA:   3'- gCCGCUg-------CCGCGCGGaaGGugGCGcg -5'
10713 3' -62.7 NC_002794.1 + 184473 0.66 0.731755
Target:  5'- cCGcGCGaACGGCGCGCggggCCccggacgcccggGCgGCGCg -3'
miRNA:   3'- -GC-CGC-UGCCGCGCGgaa-GG------------UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 123709 0.66 0.71981
Target:  5'- gGGCG-UGaGCGCGUCguucuauccgcugccCCACCGgGCg -3'
miRNA:   3'- gCCGCuGC-CGCGCGGaa-------------GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 153439 0.66 0.721655
Target:  5'- gGGCGugGacgauCGaaccgaccgagauCGuCUUUCCGCCGCGCa -3'
miRNA:   3'- gCCGCugCc----GC-------------GC-GGAAGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 69762 0.66 0.710545
Target:  5'- gCGGgGAUGGCGaCgaagaucccgacgaGCCacgagagcgCCGCCGCGUa -3'
miRNA:   3'- -GCCgCUGCCGC-G--------------CGGaa-------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 59886 0.66 0.713331
Target:  5'- -uGC-ACGGCGCaCCUgcgCCGCgUGCGCa -3'
miRNA:   3'- gcCGcUGCCGCGcGGAa--GGUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 89579 0.66 0.713331
Target:  5'- cCGGUGucauCGGC-CGUCga--GCCGCGCg -3'
miRNA:   3'- -GCCGCu---GCCGcGCGGaaggUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 60971 0.66 0.713331
Target:  5'- gGGCcuAC-GCGCGCCUccggacccUCCugCGCGa -3'
miRNA:   3'- gCCGc-UGcCGCGCGGA--------AGGugGCGCg -5'
10713 3' -62.7 NC_002794.1 + 94299 0.66 0.713331
Target:  5'- gGGCGGCucgGGCGCGCCgaugCaaggACUGCa- -3'
miRNA:   3'- gCCGCUG---CCGCGCGGaa--Gg---UGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 182255 0.66 0.713331
Target:  5'- gGaGCGACaGCGCGCCgagUCCcgaGCGg -3'
miRNA:   3'- gC-CGCUGcCGCGCGGa--AGGuggCGCg -5'
10713 3' -62.7 NC_002794.1 + 50734 0.66 0.713331
Target:  5'- cCGG-GGCGGC-CGCCUcgacucgcucgUCCGCCccGgGCg -3'
miRNA:   3'- -GCCgCUGCCGcGCGGA-----------AGGUGG--CgCG- -5'
10713 3' -62.7 NC_002794.1 + 82156 0.66 0.713331
Target:  5'- cCGGCccGACGGCuccgGCGCCcgagCCAuaaagcCCGgGCg -3'
miRNA:   3'- -GCCG--CUGCCG----CGCGGaa--GGU------GGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 65928 0.66 0.713331
Target:  5'- cCGGCGGCGGUG-GCg-UCgGCgGCGg -3'
miRNA:   3'- -GCCGCUGCCGCgCGgaAGgUGgCGCg -5'
10713 3' -62.7 NC_002794.1 + 65146 0.66 0.713331
Target:  5'- uCGGCGACuGgGuCGCCgucccgUCCGUgGCGCc -3'
miRNA:   3'- -GCCGCUGcCgC-GCGGa-----AGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 107784 0.66 0.713331
Target:  5'- cCGGCGACGaccgcguccGCGCGCauugcgaaCGCCuCGCg -3'
miRNA:   3'- -GCCGCUGC---------CGCGCGgaag----GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 76838 0.66 0.713331
Target:  5'- cCGGCGAU-GCGCGCCggCC-UCGUcgGCc -3'
miRNA:   3'- -GCCGCUGcCGCGCGGaaGGuGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 153340 0.66 0.713331
Target:  5'- aCGGCGACGcGUGUugucaggacgcgGCC--CgGCUGCGCg -3'
miRNA:   3'- -GCCGCUGC-CGCG------------CGGaaGgUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.