Results 81 - 100 of 440 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 133920 | 0.66 | 0.694666 |
Target: 5'- aCGaGaCGGCGGcCGCGCCcgUCCAgUUGCGg -3' miRNA: 3'- -GC-C-GCUGCC-GCGCGGa-AGGU-GGCGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 128532 | 0.66 | 0.694666 |
Target: 5'- uGGCucugGACGGUcggguGCGCCguccugcuggUCAUCGCGCu -3' miRNA: 3'- gCCG----CUGCCG-----CGCGGaa--------GGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 44352 | 0.66 | 0.694666 |
Target: 5'- cCGGCGagaccgagagcGCGGCGgGCgCgacgUCCGCgacgcucgaCGCGCc -3' miRNA: 3'- -GCCGC-----------UGCCGCgCG-Ga---AGGUG---------GCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 44274 | 0.66 | 0.693727 |
Target: 5'- cCGGgGACGGaggagucCGCGCCcgCCggGCCG-GCg -3' miRNA: 3'- -GCCgCUGCC-------GCGCGGaaGG--UGGCgCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 113937 | 0.66 | 0.693727 |
Target: 5'- aGGCGACGGgcCGCuGCCgggcUUCCugcagccacuccuGCuCGCGCc -3' miRNA: 3'- gCCGCUGCC--GCG-CGG----AAGG-------------UG-GCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 192666 | 0.66 | 0.685262 |
Target: 5'- uCGcGCGACucgaaGCGCCggCCGCCGuCGUa -3' miRNA: 3'- -GC-CGCUGccg--CGCGGaaGGUGGC-GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 106262 | 0.66 | 0.685262 |
Target: 5'- cCGGCGAgCGccGCGCGUCgcgCCGCCuCGg -3' miRNA: 3'- -GCCGCU-GC--CGCGCGGaa-GGUGGcGCg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 65082 | 0.66 | 0.701222 |
Target: 5'- cCGGCGGCGGCuCGaugguccgaagagaCCUcguggUCCGaggUCGCGCg -3' miRNA: 3'- -GCCGCUGCCGcGC--------------GGA-----AGGU---GGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 75800 | 0.66 | 0.694666 |
Target: 5'- cCGGCGAcaacCGGC-CGCCcUCUgcaACCGCa- -3' miRNA: 3'- -GCCGCU----GCCGcGCGGaAGG---UGGCGcg -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 58029 | 0.66 | 0.694666 |
Target: 5'- cCGGCGAaccCGcCGCGCCgcccgUCC-CCGUcgGCg -3' miRNA: 3'- -GCCGCU---GCcGCGCGGa----AGGuGGCG--CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 89579 | 0.66 | 0.713331 |
Target: 5'- cCGGUGucauCGGC-CGUCga--GCCGCGCg -3' miRNA: 3'- -GCCGCu---GCCGcGCGGaaggUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 59886 | 0.66 | 0.713331 |
Target: 5'- -uGC-ACGGCGCaCCUgcgCCGCgUGCGCa -3' miRNA: 3'- gcCGcUGCCGCGcGGAa--GGUG-GCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 69762 | 0.66 | 0.710545 |
Target: 5'- gCGGgGAUGGCGaCgaagaucccgacgaGCCacgagagcgCCGCCGCGUa -3' miRNA: 3'- -GCCgCUGCCGC-G--------------CGGaa-------GGUGGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 125682 | 0.66 | 0.704025 |
Target: 5'- uGGCuGACgGGCGaCGUgUUgCugCGCGUg -3' miRNA: 3'- gCCG-CUG-CCGC-GCGgAAgGugGCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 130089 | 0.66 | 0.710545 |
Target: 5'- uGGUuagaGACGGCcgauuucgucgagaGCGCC-UCCGCCuuGCg -3' miRNA: 3'- gCCG----CUGCCG--------------CGCGGaAGGUGGcgCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 14534 | 0.66 | 0.704025 |
Target: 5'- uCGGCcACGGCGCucucGCCc-CCGucgaCGCGCg -3' miRNA: 3'- -GCCGcUGCCGCG----CGGaaGGUg---GCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 62944 | 0.66 | 0.704025 |
Target: 5'- -uGCGugGGCuucuucGCGCCcaagaCCACCGCccGCu -3' miRNA: 3'- gcCGCugCCG------CGCGGaa---GGUGGCG--CG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 70338 | 0.66 | 0.704025 |
Target: 5'- aCGcCGACGGCcggGCGCCcgcucgUCCGCCcaccCGCu -3' miRNA: 3'- -GCcGCUGCCG---CGCGGa-----AGGUGGc---GCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 115834 | 0.66 | 0.704025 |
Target: 5'- uCGGCGGggccCGGCGgGCUcgggCCugggaCGCGCg -3' miRNA: 3'- -GCCGCU----GCCGCgCGGaa--GGug---GCGCG- -5' |
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10713 | 3' | -62.7 | NC_002794.1 | + | 149711 | 0.66 | 0.704025 |
Target: 5'- uGGCggGugGGC-CGCCUgccucgCUACgGCGUg -3' miRNA: 3'- gCCG--CugCCGcGCGGAa-----GGUGgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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