miRNA display CGI


Results 101 - 120 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 21738 0.66 0.685262
Target:  5'- aGGCcgaaGCGGUGCGCCUcccUCCACgGg-- -3'
miRNA:   3'- gCCGc---UGCCGCGCGGA---AGGUGgCgcg -5'
10713 3' -62.7 NC_002794.1 + 34264 0.66 0.685262
Target:  5'- aGGCgGACcGCGCGCaggCgGCCaGCGCc -3'
miRNA:   3'- gCCG-CUGcCGCGCGgaaGgUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 12027 0.66 0.679601
Target:  5'- cCGGCccgGGCGucCGCGCCUuccccugccgguaucUCUggGCCGCGCc -3'
miRNA:   3'- -GCCG---CUGCc-GCGCGGA---------------AGG--UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 53725 0.66 0.682433
Target:  5'- gGGUGGacccgcgccaucgcCGGC-CGCCgcugCCGCCGcCGCu -3'
miRNA:   3'- gCCGCU--------------GCCGcGCGGaa--GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 119452 0.66 0.679601
Target:  5'- gCGGUGGCGGCGuCGacuucgaCUUCUucgacgucuuggucgGCUGCGUc -3'
miRNA:   3'- -GCCGCUGCCGC-GCg------GAAGG---------------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 44274 0.66 0.693727
Target:  5'- cCGGgGACGGaggagucCGCGCCcgCCggGCCG-GCg -3'
miRNA:   3'- -GCCgCUGCC-------GCGCGGaaGG--UGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 44352 0.66 0.694666
Target:  5'- cCGGCGagaccgagagcGCGGCGgGCgCgacgUCCGCgacgcucgaCGCGCc -3'
miRNA:   3'- -GCCGC-----------UGCCGCgCG-Ga---AGGUG---------GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14534 0.66 0.704025
Target:  5'- uCGGCcACGGCGCucucGCCc-CCGucgaCGCGCg -3'
miRNA:   3'- -GCCGcUGCCGCG----CGGaaGGUg---GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 62944 0.66 0.704025
Target:  5'- -uGCGugGGCuucuucGCGCCcaagaCCACCGCccGCu -3'
miRNA:   3'- gcCGCugCCG------CGCGGaa---GGUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 70338 0.66 0.704025
Target:  5'- aCGcCGACGGCcggGCGCCcgcucgUCCGCCcaccCGCu -3'
miRNA:   3'- -GCcGCUGCCG---CGCGGa-----AGGUGGc---GCG- -5'
10713 3' -62.7 NC_002794.1 + 115834 0.66 0.704025
Target:  5'- uCGGCGGggccCGGCGgGCUcgggCCugggaCGCGCg -3'
miRNA:   3'- -GCCGCU----GCCGCgCGGaa--GGug---GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 149711 0.66 0.704025
Target:  5'- uGGCggGugGGC-CGCCUgccucgCUACgGCGUg -3'
miRNA:   3'- gCCG--CugCCGcGCGGAa-----GGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 58029 0.66 0.694666
Target:  5'- cCGGCGAaccCGcCGCGCCgcccgUCC-CCGUcgGCg -3'
miRNA:   3'- -GCCGCU---GCcGCGCGGa----AGGuGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 75800 0.66 0.694666
Target:  5'- cCGGCGAcaacCGGC-CGCCcUCUgcaACCGCa- -3'
miRNA:   3'- -GCCGCU----GCCGcGCGGaAGG---UGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 65082 0.66 0.701222
Target:  5'- cCGGCGGCGGCuCGaugguccgaagagaCCUcguggUCCGaggUCGCGCg -3'
miRNA:   3'- -GCCGCUGCCGcGC--------------GGA-----AGGU---GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 63933 0.66 0.701222
Target:  5'- cCGGC--CGGCGagucucgaguccgaCGCCU--CGCCGCGCg -3'
miRNA:   3'- -GCCGcuGCCGC--------------GCGGAagGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 191365 0.66 0.694666
Target:  5'- uCGGgGACGGgccggacccucCGCGCCcgCgGCCGCcCa -3'
miRNA:   3'- -GCCgCUGCC-----------GCGCGGaaGgUGGCGcG- -5'
10713 3' -62.7 NC_002794.1 + 57400 0.66 0.694666
Target:  5'- cCGGCucCGGCGC-CCgcguggCCGgCGUGCu -3'
miRNA:   3'- -GCCGcuGCCGCGcGGaa----GGUgGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 133920 0.66 0.694666
Target:  5'- aCGaGaCGGCGGcCGCGCCcgUCCAgUUGCGg -3'
miRNA:   3'- -GC-C-GCUGCC-GCGCGGa-AGGU-GGCGCg -5'
10713 3' -62.7 NC_002794.1 + 128532 0.66 0.694666
Target:  5'- uGGCucugGACGGUcggguGCGCCguccugcuggUCAUCGCGCu -3'
miRNA:   3'- gCCG----CUGCCG-----CGCGGaa--------GGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.