miRNA display CGI


Results 21 - 40 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 59886 0.66 0.713331
Target:  5'- -uGC-ACGGCGCaCCUgcgCCGCgUGCGCa -3'
miRNA:   3'- gcCGcUGCCGCGcGGAa--GGUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 50734 0.66 0.713331
Target:  5'- cCGG-GGCGGC-CGCCUcgacucgcucgUCCGCCccGgGCg -3'
miRNA:   3'- -GCCgCUGCCGcGCGGA-----------AGGUGG--CgCG- -5'
10713 3' -62.7 NC_002794.1 + 82156 0.66 0.713331
Target:  5'- cCGGCccGACGGCuccgGCGCCcgagCCAuaaagcCCGgGCg -3'
miRNA:   3'- -GCCG--CUGCCG----CGCGGaa--GGU------GGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 153340 0.66 0.713331
Target:  5'- aCGGCGACGcGUGUugucaggacgcgGCC--CgGCUGCGCg -3'
miRNA:   3'- -GCCGCUGC-CGCG------------CGGaaGgUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 76838 0.66 0.713331
Target:  5'- cCGGCGAU-GCGCGCCggCC-UCGUcgGCc -3'
miRNA:   3'- -GCCGCUGcCGCGCGGaaGGuGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 107784 0.66 0.713331
Target:  5'- cCGGCGACGaccgcguccGCGCGCauugcgaaCGCCuCGCg -3'
miRNA:   3'- -GCCGCUGC---------CGCGCGgaag----GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 65146 0.66 0.713331
Target:  5'- uCGGCGACuGgGuCGCCgucccgUCCGUgGCGCc -3'
miRNA:   3'- -GCCGCUGcCgC-GCGGa-----AGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 65928 0.66 0.713331
Target:  5'- cCGGCGGCGGUG-GCg-UCgGCgGCGg -3'
miRNA:   3'- -GCCGCUGCCGCgCGgaAGgUGgCGCg -5'
10713 3' -62.7 NC_002794.1 + 69762 0.66 0.710545
Target:  5'- gCGGgGAUGGCGaCgaagaucccgacgaGCCacgagagcgCCGCCGCGUa -3'
miRNA:   3'- -GCCgCUGCCGC-G--------------CGGaa-------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 130089 0.66 0.710545
Target:  5'- uGGUuagaGACGGCcgauuucgucgagaGCGCC-UCCGCCuuGCg -3'
miRNA:   3'- gCCG----CUGCCG--------------CGCGGaAGGUGGcgCG- -5'
10713 3' -62.7 NC_002794.1 + 149711 0.66 0.704025
Target:  5'- uGGCggGugGGC-CGCCUgccucgCUACgGCGUg -3'
miRNA:   3'- gCCG--CugCCGcGCGGAa-----GGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 115834 0.66 0.704025
Target:  5'- uCGGCGGggccCGGCGgGCUcgggCCugggaCGCGCg -3'
miRNA:   3'- -GCCGCU----GCCGCgCGGaa--GGug---GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 70338 0.66 0.704025
Target:  5'- aCGcCGACGGCcggGCGCCcgcucgUCCGCCcaccCGCu -3'
miRNA:   3'- -GCcGCUGCCG---CGCGGa-----AGGUGGc---GCG- -5'
10713 3' -62.7 NC_002794.1 + 62944 0.66 0.704025
Target:  5'- -uGCGugGGCuucuucGCGCCcaagaCCACCGCccGCu -3'
miRNA:   3'- gcCGCugCCG------CGCGGaa---GGUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 14534 0.66 0.704025
Target:  5'- uCGGCcACGGCGCucucGCCc-CCGucgaCGCGCg -3'
miRNA:   3'- -GCCGcUGCCGCG----CGGaaGGUg---GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 125682 0.66 0.704025
Target:  5'- uGGCuGACgGGCGaCGUgUUgCugCGCGUg -3'
miRNA:   3'- gCCG-CUG-CCGC-GCGgAAgGugGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 65082 0.66 0.701222
Target:  5'- cCGGCGGCGGCuCGaugguccgaagagaCCUcguggUCCGaggUCGCGCg -3'
miRNA:   3'- -GCCGCUGCCGcGC--------------GGA-----AGGU---GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 63933 0.66 0.701222
Target:  5'- cCGGC--CGGCGagucucgaguccgaCGCCU--CGCCGCGCg -3'
miRNA:   3'- -GCCGcuGCCGC--------------GCGGAagGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 75800 0.66 0.694666
Target:  5'- cCGGCGAcaacCGGC-CGCCcUCUgcaACCGCa- -3'
miRNA:   3'- -GCCGCU----GCCGcGCGGaAGG---UGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 191365 0.66 0.694666
Target:  5'- uCGGgGACGGgccggacccucCGCGCCcgCgGCCGCcCa -3'
miRNA:   3'- -GCCgCUGCC-----------GCGCGGaaGgUGGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.