miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 17459 0.71 0.799679
Target:  5'- cGAcCGAGGUCGaAGGUucgcuccacACGCCGCGuuuGCg -3'
miRNA:   3'- -CUuGCUUCGGC-UCCA---------UGCGGCGCu--UG- -5'
10713 5' -54.7 NC_002794.1 + 55726 0.71 0.808488
Target:  5'- uGACGgcGuuGuGGUACGgcaCCGCGAGCc -3'
miRNA:   3'- cUUGCuuCggCuCCAUGC---GGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 44196 0.71 0.808488
Target:  5'- cGGGCGAAGCCGGGccgACGuCCGgcuCGGGCg -3'
miRNA:   3'- -CUUGCUUCGGCUCca-UGC-GGC---GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 95777 0.71 0.808488
Target:  5'- cGACGGcGGCCGGGGcgagagGCGCgGCGGAg -3'
miRNA:   3'- cUUGCU-UCGGCUCCa-----UGCGgCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 140009 0.7 0.81714
Target:  5'- gGGugGAGGCCGcGG-AgGCCGCGGc- -3'
miRNA:   3'- -CUugCUUCGGCuCCaUgCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 14866 0.7 0.81714
Target:  5'- -uACGccAGCCGcccGGUuCGCCGCGAGCc -3'
miRNA:   3'- cuUGCu-UCGGCu--CCAuGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 72169 0.7 0.81714
Target:  5'- -cGCGcuGCC--GGUAgGCCGCGAACg -3'
miRNA:   3'- cuUGCuuCGGcuCCAUgCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 53285 0.7 0.81714
Target:  5'- cGAGCGAccacuccagguGCCGAGcGgucggccgGCGCCGCGAGa -3'
miRNA:   3'- -CUUGCUu----------CGGCUC-Ca-------UGCGGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 103892 0.7 0.825627
Target:  5'- aGAGCGAcgAGCagCGGGGcgagaACGCCGCGcAACg -3'
miRNA:   3'- -CUUGCU--UCG--GCUCCa----UGCGGCGC-UUG- -5'
10713 5' -54.7 NC_002794.1 + 1 0.7 0.825627
Target:  5'- ---CGAGcGCCGAGacGCgGCCGCGAACa -3'
miRNA:   3'- cuuGCUU-CGGCUCcaUG-CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 110617 0.7 0.833941
Target:  5'- gGAGCgGGAGCCGcg--GCGCCGCGGcgGCg -3'
miRNA:   3'- -CUUG-CUUCGGCuccaUGCGGCGCU--UG- -5'
10713 5' -54.7 NC_002794.1 + 180365 0.7 0.833941
Target:  5'- aGGACGAccGGCgCGAGG-ACGCUGCcGGCc -3'
miRNA:   3'- -CUUGCU--UCG-GCUCCaUGCGGCGcUUG- -5'
10713 5' -54.7 NC_002794.1 + 140958 0.7 0.833941
Target:  5'- -cGCGGAGUgcgUGAGGUugGCCGagcgGAACc -3'
miRNA:   3'- cuUGCUUCG---GCUCCAugCGGCg---CUUG- -5'
10713 5' -54.7 NC_002794.1 + 58523 0.7 0.833941
Target:  5'- -cACGGGcacGCCGAGGccuuCGCCGCGGcgcGCg -3'
miRNA:   3'- cuUGCUU---CGGCUCCau--GCGGCGCU---UG- -5'
10713 5' -54.7 NC_002794.1 + 91609 0.7 0.837216
Target:  5'- -cGCGcGGCCGAGGgccacgccgaccuccUGCGCCGCcuguccGAGCu -3'
miRNA:   3'- cuUGCuUCGGCUCC---------------AUGCGGCG------CUUG- -5'
10713 5' -54.7 NC_002794.1 + 126276 0.7 0.842075
Target:  5'- uGGCGgcGCUGGGcuugcuGUGCGCCGCGcGCc -3'
miRNA:   3'- cUUGCuuCGGCUC------CAUGCGGCGCuUG- -5'
10713 5' -54.7 NC_002794.1 + 111597 0.7 0.842075
Target:  5'- cGAGCGGggugaucucccaGGCCGgcGGGgcCGCCGCGGc- -3'
miRNA:   3'- -CUUGCU------------UCGGC--UCCauGCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 118940 0.7 0.849234
Target:  5'- -cACGAGcCCGGGGUGCaggaagaGCCGCGuGACg -3'
miRNA:   3'- cuUGCUUcGGCUCCAUG-------CGGCGC-UUG- -5'
10713 5' -54.7 NC_002794.1 + 120093 0.7 0.85002
Target:  5'- cGACGAccguGCCGAGc-GCGCCGCGcguGACg -3'
miRNA:   3'- cUUGCUu---CGGCUCcaUGCGGCGC---UUG- -5'
10713 5' -54.7 NC_002794.1 + 115976 0.7 0.85002
Target:  5'- gGAGCG-GGaCGGGGagcgGCGCCGCGGAg -3'
miRNA:   3'- -CUUGCuUCgGCUCCa---UGCGGCGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.