miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 53522 0.68 0.923456
Target:  5'- aGAugGAgaAGCCGuGG-GCGCgGCGGccGCa -3'
miRNA:   3'- -CUugCU--UCGGCuCCaUGCGgCGCU--UG- -5'
10713 5' -54.7 NC_002794.1 + 54235 0.66 0.966165
Target:  5'- cGGAUGAagcGGCCGAgcgcgcGGUccacgGCGCCGCGu-- -3'
miRNA:   3'- -CUUGCU---UCGGCU------CCA-----UGCGGCGCuug -5'
10713 5' -54.7 NC_002794.1 + 55001 0.69 0.886716
Target:  5'- cGGCGAcucGCCGGGcGUccgccgccgcGcCGCCGCGAGCa -3'
miRNA:   3'- cUUGCUu--CGGCUC-CA----------U-GCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 55292 0.67 0.947659
Target:  5'- cGACGAGGgCGGcGGcgGCGUCGCGGcggGCg -3'
miRNA:   3'- cUUGCUUCgGCU-CCa-UGCGGCGCU---UG- -5'
10713 5' -54.7 NC_002794.1 + 55726 0.71 0.808488
Target:  5'- uGACGgcGuuGuGGUACGgcaCCGCGAGCc -3'
miRNA:   3'- cUUGCuuCggCuCCAUGC---GGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 55780 0.67 0.947659
Target:  5'- ---aGAAGCUGGcGUugGCCuccaGCGAGCg -3'
miRNA:   3'- cuugCUUCGGCUcCAugCGG----CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 55959 0.75 0.55368
Target:  5'- gGAACGGguaguAGUCGAGGUGgauggcguaGCCGCGGGCg -3'
miRNA:   3'- -CUUGCU-----UCGGCUCCAUg--------CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 58011 0.66 0.966165
Target:  5'- --uCGccGCCGGGGccgcCGCCGgCGAACc -3'
miRNA:   3'- cuuGCuuCGGCUCCau--GCGGC-GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 58523 0.7 0.833941
Target:  5'- -cACGGGcacGCCGAGGccuuCGCCGCGGcgcGCg -3'
miRNA:   3'- cuUGCUU---CGGCUCCau--GCGGCGCU---UG- -5'
10713 5' -54.7 NC_002794.1 + 58968 0.67 0.943284
Target:  5'- cGugGAGGCCGAGcGccUGCGCgaCGaCGAGCu -3'
miRNA:   3'- cUugCUUCGGCUC-C--AUGCG--GC-GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 59129 0.66 0.9629
Target:  5'- --cCGAGGCCGAcuucgcgcaGGgccGCGUCGCGcACg -3'
miRNA:   3'- cuuGCUUCGGCU---------CCa--UGCGGCGCuUG- -5'
10713 5' -54.7 NC_002794.1 + 61519 0.69 0.872667
Target:  5'- cGGACGGcGGCCGccGGcGgcCGCCGCGAAg -3'
miRNA:   3'- -CUUGCU-UCGGC--UC-CauGCGGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 61864 0.66 0.966165
Target:  5'- uGGACGAcgccgcgcGCCGucGUcgGCGCCGCGcGGCg -3'
miRNA:   3'- -CUUGCUu-------CGGCucCA--UGCGGCGC-UUG- -5'
10713 5' -54.7 NC_002794.1 + 64785 0.73 0.704831
Target:  5'- aGACGAcGCCGGuuccgcGGcgagcgACGCCGCGGACg -3'
miRNA:   3'- cUUGCUuCGGCU------CCa-----UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 65938 0.68 0.917912
Target:  5'- uGGCGucGGCgGcGGUAuCGUCGCGAGCg -3'
miRNA:   3'- cUUGCu-UCGgCuCCAU-GCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 66514 0.72 0.766793
Target:  5'- cGAGCGAuaGGCCGuccccggguccgcgaAGGUcgGCGCCgGCGGAUa -3'
miRNA:   3'- -CUUGCU--UCGGC---------------UCCA--UGCGG-CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 66963 0.77 0.476363
Target:  5'- cGGCGAGucgcucGCCGGGGgaGCGUCGCGAGCa -3'
miRNA:   3'- cUUGCUU------CGGCUCCa-UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 69739 0.68 0.923456
Target:  5'- gGAGCGccacGGCCGGcg-ACGCCGCGGGg -3'
miRNA:   3'- -CUUGCu---UCGGCUccaUGCGGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 70289 0.66 0.959421
Target:  5'- aGAGC-AGGCCGGGGgg-GCC-CGGGCg -3'
miRNA:   3'- -CUUGcUUCGGCUCCaugCGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 71813 0.66 0.9629
Target:  5'- cGGCGAGGCCGccu--CGUCGCGAGg -3'
miRNA:   3'- cUUGCUUCGGCuccauGCGGCGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.