miRNA display CGI


Results 21 - 40 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 149850 0.67 0.947659
Target:  5'- aGGACGggGaCGAGGaGCGgCCGCccGCu -3'
miRNA:   3'- -CUUGCuuCgGCUCCaUGC-GGCGcuUG- -5'
10713 5' -54.7 NC_002794.1 + 149660 0.67 0.951804
Target:  5'- cGAgGAGGCCGAGcGggggcGCGUCGCGcucGACu -3'
miRNA:   3'- cUUgCUUCGGCUC-Ca----UGCGGCGC---UUG- -5'
10713 5' -54.7 NC_002794.1 + 149500 0.69 0.865323
Target:  5'- gGGAUGggGauggugaCGGGGUcguCGCCGgGAGCg -3'
miRNA:   3'- -CUUGCuuCg------GCUCCAu--GCGGCgCUUG- -5'
10713 5' -54.7 NC_002794.1 + 149335 0.67 0.947659
Target:  5'- cGGAcCGAaccGGCCGGGGU-CGCgggggCGUGGACg -3'
miRNA:   3'- -CUU-GCU---UCGGCUCCAuGCG-----GCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 148072 0.66 0.969223
Target:  5'- ---gGGAGCCGGGaGUG-GCCuCGAGCg -3'
miRNA:   3'- cuugCUUCGGCUC-CAUgCGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 147332 0.69 0.893411
Target:  5'- --uCGggGCCGAucucGUGCGCCGCu--- -3'
miRNA:   3'- cuuGCuuCGGCUc---CAUGCGGCGcuug -5'
10713 5' -54.7 NC_002794.1 + 147214 0.66 0.966165
Target:  5'- cGGGcCGggGCCGGGGcguUGgCGCGAu- -3'
miRNA:   3'- -CUU-GCuuCGGCUCCau-GCgGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 147038 0.75 0.557657
Target:  5'- aGGACGAAGCCGucggcggccggucuaAGGacggaGCCGCGGGCg -3'
miRNA:   3'- -CUUGCUUCGGC---------------UCCaug--CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 146561 0.67 0.933839
Target:  5'- cGGCGGGcCCGAGuuccgaGUcCGCCGCGGACu -3'
miRNA:   3'- cUUGCUUcGGCUC------CAuGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 145926 0.67 0.933342
Target:  5'- cGAGCGGaggGGCCGGcgagagcGGUucgggaGUCGCGAGCg -3'
miRNA:   3'- -CUUGCU---UCGGCU-------CCAug----CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 145858 0.69 0.865323
Target:  5'- cGACGAGccGCCGAGG---GCCGCGAc- -3'
miRNA:   3'- cUUGCUU--CGGCUCCaugCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 145572 0.66 0.969223
Target:  5'- cGGACGAGcGCCGAcGGaGCGgcggccggcucCCGCGGAg -3'
miRNA:   3'- -CUUGCUU-CGGCU-CCaUGC-----------GGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 145521 0.68 0.899881
Target:  5'- -cGCGAGGCCGGcccgagcgccucGG-GCGCCcCGAGCg -3'
miRNA:   3'- cuUGCUUCGGCU------------CCaUGCGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 145116 0.66 0.9629
Target:  5'- -cGCGguGUCGGGGcagcucAUGCUGCGGGCg -3'
miRNA:   3'- cuUGCuuCGGCUCCa-----UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 141432 0.76 0.543774
Target:  5'- cGGCGGGggcGCCGGGG-GCGCCGgGAGCg -3'
miRNA:   3'- cUUGCUU---CGGCUCCaUGCGGCgCUUG- -5'
10713 5' -54.7 NC_002794.1 + 140958 0.7 0.833941
Target:  5'- -cGCGGAGUgcgUGAGGUugGCCGagcgGAACc -3'
miRNA:   3'- cuUGCUUCG---GCUCCAugCGGCg---CUUG- -5'
10713 5' -54.7 NC_002794.1 + 140009 0.7 0.81714
Target:  5'- gGGugGAGGCCGcGG-AgGCCGCGGc- -3'
miRNA:   3'- -CUugCUUCGGCuCCaUgCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 138966 0.66 0.9629
Target:  5'- cGACGcGGCgGAcgGGUugGCCugGCGGGCc -3'
miRNA:   3'- cUUGCuUCGgCU--CCAugCGG--CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 137776 0.72 0.713748
Target:  5'- aGGAUGggGUCGAGGUGCaggucgcugaggaGCCGCaGGAa -3'
miRNA:   3'- -CUUGCuuCGGCUCCAUG-------------CGGCG-CUUg -5'
10713 5' -54.7 NC_002794.1 + 137378 0.72 0.753569
Target:  5'- cGGGCGAGcGCCGAcgcgGGUccggucuguccgGCGuCCGCGGACg -3'
miRNA:   3'- -CUUGCUU-CGGCU----CCA------------UGC-GGCGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.