miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 48475 0.66 0.9629
Target:  5'- aGGGCGAAGCCGccGGGcaGCGCCcaCGAcACg -3'
miRNA:   3'- -CUUGCUUCGGC--UCCa-UGCGGc-GCU-UG- -5'
10713 5' -54.7 NC_002794.1 + 41064 0.66 0.9629
Target:  5'- --uCGggGUUcGGGUGC-CCGCGAAUg -3'
miRNA:   3'- cuuGCuuCGGcUCCAUGcGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 138966 0.66 0.9629
Target:  5'- cGACGcGGCgGAcgGGUugGCCugGCGGGCc -3'
miRNA:   3'- cUUGCuUCGgCU--CCAugCGG--CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 71813 0.66 0.9629
Target:  5'- cGGCGAGGCCGccu--CGUCGCGAGg -3'
miRNA:   3'- cUUGCUUCGGCuccauGCGGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 59129 0.66 0.9629
Target:  5'- --cCGAGGCCGAcuucgcgcaGGgccGCGUCGCGcACg -3'
miRNA:   3'- cuuGCUUCGGCU---------CCa--UGCGGCGCuUG- -5'
10713 5' -54.7 NC_002794.1 + 145116 0.66 0.9629
Target:  5'- -cGCGguGUCGGGGcagcucAUGCUGCGGGCg -3'
miRNA:   3'- cuUGCuuCGGCUCCa-----UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 44065 0.66 0.961879
Target:  5'- cGACaGAAGCCGcucguggugacAuaccgggcaguaacGGUGCGCCGaCGAGCg -3'
miRNA:   3'- cUUG-CUUCGGC-----------U--------------CCAUGCGGC-GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 70289 0.66 0.959421
Target:  5'- aGAGC-AGGCCGGGGgg-GCC-CGGGCg -3'
miRNA:   3'- -CUUGcUUCGGCUCCaugCGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 78391 0.66 0.959421
Target:  5'- cGACGgcGacgaCGAGGccuCGCCGCGAc- -3'
miRNA:   3'- cUUGCuuCg---GCUCCau-GCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 27238 0.66 0.959421
Target:  5'- cGAugGAGGCCGAcgugaacuuuauGGaccacuCGCCGCacGGACu -3'
miRNA:   3'- -CUugCUUCGGCU------------CCau----GCGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 47405 0.66 0.959421
Target:  5'- --cCGAAGCCGccGUcgGCGCCGUcgcgcgGAGCg -3'
miRNA:   3'- cuuGCUUCGGCucCA--UGCGGCG------CUUG- -5'
10713 5' -54.7 NC_002794.1 + 189856 0.66 0.955724
Target:  5'- -cGCGGAGCCGucGGcgucguCGCCGCcGACc -3'
miRNA:   3'- cuUGCUUCGGCu-CCau----GCGGCGcUUG- -5'
10713 5' -54.7 NC_002794.1 + 10777 0.66 0.955724
Target:  5'- --gUGGAGCUGcaGUGCGCCaucGCGAACa -3'
miRNA:   3'- cuuGCUUCGGCucCAUGCGG---CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 49652 0.66 0.955724
Target:  5'- cGGCGAGucccgcGCCGAccGGUACGCgaagcgcaaGCGGACg -3'
miRNA:   3'- cUUGCUU------CGGCU--CCAUGCGg--------CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 134202 0.66 0.955724
Target:  5'- uGGugGggGCCGucGGU-CGCCaaGCGAc- -3'
miRNA:   3'- -CUugCuuCGGCu-CCAuGCGG--CGCUug -5'
10713 5' -54.7 NC_002794.1 + 179599 0.67 0.951804
Target:  5'- ---aGAucacGUCGAGGaGCGgCGCGAGCg -3'
miRNA:   3'- cuugCUu---CGGCUCCaUGCgGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 149660 0.67 0.951804
Target:  5'- cGAgGAGGCCGAGcGggggcGCGUCGCGcucGACu -3'
miRNA:   3'- cUUgCUUCGGCUC-Ca----UGCGGCGC---UUG- -5'
10713 5' -54.7 NC_002794.1 + 99236 0.67 0.947659
Target:  5'- aGAGCGGAccGCCGGacccCGCCGCGGAg -3'
miRNA:   3'- -CUUGCUU--CGGCUccauGCGGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 149335 0.67 0.947659
Target:  5'- cGGAcCGAaccGGCCGGGGU-CGCgggggCGUGGACg -3'
miRNA:   3'- -CUU-GCU---UCGGCUCCAuGCG-----GCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 55780 0.67 0.947659
Target:  5'- ---aGAAGCUGGcGUugGCCuccaGCGAGCg -3'
miRNA:   3'- cuugCUUCGGCUcCAugCGG----CGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.