Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10714 | 3' | -57.9 | NC_002794.1 | + | 137434 | 0.66 | 0.863318 |
Target: 5'- -cGCGCCGGCGCUcuggaacgacUCggcggaaUCCGCCgugUCGg -3' miRNA: 3'- cuCGUGGUCGCGA----------AGa------AGGCGGa--GGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 144726 | 0.7 | 0.663566 |
Target: 5'- uGAGCugCAGC---UCUUCCGCCagcauuUCCAc -3' miRNA: 3'- -CUCGugGUCGcgaAGAAGGCGG------AGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 148204 | 0.74 | 0.440206 |
Target: 5'- cGGCGCCGGCGCgcgCUcgaUCgGUCUCCGg -3' miRNA: 3'- cUCGUGGUCGCGaa-GA---AGgCGGAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 150491 | 0.66 | 0.870667 |
Target: 5'- -uGCACCuGCgGCg----CCGCCUCCu -3' miRNA: 3'- cuCGUGGuCG-CGaagaaGGCGGAGGu -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 152556 | 0.66 | 0.870667 |
Target: 5'- aGAGUGCCaggagcGGCGCUUCa-CCGCCgcggcggCCGc -3' miRNA: 3'- -CUCGUGG------UCGCGAAGaaGGCGGa------GGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 153639 | 0.69 | 0.723055 |
Target: 5'- uGGCACgaucaCAGCGCUUacgCCGCgUCCGg -3' miRNA: 3'- cUCGUG-----GUCGCGAAgaaGGCGgAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 156398 | 0.68 | 0.751893 |
Target: 5'- aGAGCgGCCGGCGCcgCggCCGCggCCAc -3' miRNA: 3'- -CUCG-UGGUCGCGaaGaaGGCGgaGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 181133 | 1.08 | 0.002488 |
Target: 5'- gGAGCACCAGCGCUUCUUCCGCCUCCAg -3' miRNA: 3'- -CUCGUGGUCGCGAAGAAGGCGGAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 181543 | 0.68 | 0.732755 |
Target: 5'- cGGCggGCCGGCGCUcUCggUCGCCgggCCAa -3' miRNA: 3'- cUCG--UGGUCGCGA-AGaaGGCGGa--GGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 182984 | 0.67 | 0.823668 |
Target: 5'- cGAGCcgacgGCCGGCGCUUCgccgcgggCGCC-CCGc -3' miRNA: 3'- -CUCG-----UGGUCGCGAAGaag-----GCGGaGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 185257 | 0.66 | 0.848021 |
Target: 5'- aAGCGCCAGCGgacg--CCGCCggCCGa -3' miRNA: 3'- cUCGUGGUCGCgaagaaGGCGGa-GGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 191513 | 0.67 | 0.806577 |
Target: 5'- aGGUGCCAGCGCcgggcgUCggCCcgcGCCUCCc -3' miRNA: 3'- cUCGUGGUCGCGa-----AGaaGG---CGGAGGu -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 192468 | 0.68 | 0.761314 |
Target: 5'- -cGcCACCAGCGCcgagcccUCgUCCGCCUCg- -3' miRNA: 3'- cuC-GUGGUCGCGa------AGaAGGCGGAGgu -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 194026 | 0.67 | 0.823668 |
Target: 5'- -cGcCGCCGGCGCcUCgcCCGCCgCCGc -3' miRNA: 3'- cuC-GUGGUCGCGaAGaaGGCGGaGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 194067 | 0.66 | 0.870667 |
Target: 5'- aGAGCGCC-GC-CUUCgucgCCGCCaCCGc -3' miRNA: 3'- -CUCGUGGuCGcGAAGaa--GGCGGaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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