miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 3' -57.9 NC_002794.1 + 49271 0.66 0.848021
Target:  5'- cGGGCGCUccaacggcccgGGCGCcg---CCGCCUCCc -3'
miRNA:   3'- -CUCGUGG-----------UCGCGaagaaGGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 67418 0.66 0.855768
Target:  5'- cGGCGCCAGCGUcggcggcgugUCgcgCCGCUUCgGg -3'
miRNA:   3'- cUCGUGGUCGCGa---------AGaa-GGCGGAGgU- -5'
10714 3' -57.9 NC_002794.1 + 84297 0.66 0.844869
Target:  5'- gGAGCGgCGGCGCUUCcuggcgaccgggCCGCCcgagagCCGc -3'
miRNA:   3'- -CUCGUgGUCGCGAAGaa----------GGCGGa-----GGU- -5'
10714 3' -57.9 NC_002794.1 + 114105 0.67 0.788874
Target:  5'- cGAGCucguUCAGCGCcgacagcucgUUCUUgCCGCCggCCAg -3'
miRNA:   3'- -CUCGu---GGUCGCG----------AAGAA-GGCGGa-GGU- -5'
10714 3' -57.9 NC_002794.1 + 113256 0.67 0.788874
Target:  5'- -cGCugCAGCGCg---UCCGCCcgcucggCCAg -3'
miRNA:   3'- cuCGugGUCGCGaagaAGGCGGa------GGU- -5'
10714 3' -57.9 NC_002794.1 + 105910 0.67 0.788874
Target:  5'- cGGCGgCGGCGCUaCcgCCGCCgCCGg -3'
miRNA:   3'- cUCGUgGUCGCGAaGaaGGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 100785 0.67 0.788874
Target:  5'- -cGCGCCuGCGgUUCgcggCCGCUUCUg -3'
miRNA:   3'- cuCGUGGuCGCgAAGaa--GGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 137085 0.67 0.797798
Target:  5'- -cGCGCCAugucgcccgcucGCGCUcCUUCCGCgacCUCCc -3'
miRNA:   3'- cuCGUGGU------------CGCGAaGAAGGCG---GAGGu -5'
10714 3' -57.9 NC_002794.1 + 191513 0.67 0.806577
Target:  5'- aGGUGCCAGCGCcgggcgUCggCCcgcGCCUCCc -3'
miRNA:   3'- cUCGUGGUCGCGa-----AGaaGG---CGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 182984 0.67 0.823668
Target:  5'- cGAGCcgacgGCCGGCGCUUCgccgcgggCGCC-CCGc -3'
miRNA:   3'- -CUCG-----UGGUCGCGAAGaag-----GCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 60963 0.67 0.815203
Target:  5'- cGAGCGCCGG-GCcuacgCgCGCCUCCGg -3'
miRNA:   3'- -CUCGUGGUCgCGaagaaG-GCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 128845 0.67 0.815203
Target:  5'- uGAGCGCCGGCGUcgaCgacgCCGCUgccgCCGu -3'
miRNA:   3'- -CUCGUGGUCGCGaa-Gaa--GGCGGa---GGU- -5'
10714 3' -57.9 NC_002794.1 + 116146 0.66 0.840084
Target:  5'- cGGCgGCCAGgGCcugcaCCGCCUCCGu -3'
miRNA:   3'- cUCG-UGGUCgCGaagaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 194026 0.67 0.823668
Target:  5'- -cGcCGCCGGCGCcUCgcCCGCCgCCGc -3'
miRNA:   3'- cuC-GUGGUCGCGaAGaaGGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 194067 0.66 0.870667
Target:  5'- aGAGCGCC-GC-CUUCgucgCCGCCaCCGc -3'
miRNA:   3'- -CUCGUGGuCGcGAAGaa--GGCGGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.