miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 3' -57.9 NC_002794.1 + 191513 0.67 0.806577
Target:  5'- aGGUGCCAGCGCcgggcgUCggCCcgcGCCUCCc -3'
miRNA:   3'- cUCGUGGUCGCGa-----AGaaGG---CGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 137085 0.67 0.797798
Target:  5'- -cGCGCCAugucgcccgcucGCGCUcCUUCCGCgacCUCCc -3'
miRNA:   3'- cuCGUGGU------------CGCGAaGAAGGCG---GAGGu -5'
10714 3' -57.9 NC_002794.1 + 100785 0.67 0.788874
Target:  5'- -cGCGCCuGCGgUUCgcggCCGCUUCUg -3'
miRNA:   3'- cuCGUGGuCGCgAAGaa--GGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 105910 0.67 0.788874
Target:  5'- cGGCGgCGGCGCUaCcgCCGCCgCCGg -3'
miRNA:   3'- cUCGUgGUCGCGAaGaaGGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 113256 0.67 0.788874
Target:  5'- -cGCugCAGCGCg---UCCGCCcgcucggCCAg -3'
miRNA:   3'- cuCGugGUCGCGaagaAGGCGGa------GGU- -5'
10714 3' -57.9 NC_002794.1 + 114105 0.67 0.788874
Target:  5'- cGAGCucguUCAGCGCcgacagcucgUUCUUgCCGCCggCCAg -3'
miRNA:   3'- -CUCGu---GGUCGCG----------AAGAA-GGCGGa-GGU- -5'
10714 3' -57.9 NC_002794.1 + 192468 0.68 0.761314
Target:  5'- -cGcCACCAGCGCcgagcccUCgUCCGCCUCg- -3'
miRNA:   3'- cuC-GUGGUCGCGa------AGaAGGCGGAGgu -5'
10714 3' -57.9 NC_002794.1 + 156398 0.68 0.751893
Target:  5'- aGAGCgGCCGGCGCcgCggCCGCggCCAc -3'
miRNA:   3'- -CUCG-UGGUCGCGaaGaaGGCGgaGGU- -5'
10714 3' -57.9 NC_002794.1 + 49615 0.68 0.751893
Target:  5'- cGGGCGCCggcGGCGCcUCgcCCGCC-CCu -3'
miRNA:   3'- -CUCGUGG---UCGCGaAGaaGGCGGaGGu -5'
10714 3' -57.9 NC_002794.1 + 99598 0.68 0.742371
Target:  5'- cGGCGgCGGCGCgcgcUCgcgCCGCCUCg- -3'
miRNA:   3'- cUCGUgGUCGCGa---AGaa-GGCGGAGgu -5'
10714 3' -57.9 NC_002794.1 + 112263 0.68 0.742371
Target:  5'- cGGgACCGGCGUcUCguccUCgGCCUCCGu -3'
miRNA:   3'- cUCgUGGUCGCGaAGa---AGgCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 59920 0.68 0.732755
Target:  5'- uGGGCGCCcGCGUgcaggaccUCUUCCGCgUCUu -3'
miRNA:   3'- -CUCGUGGuCGCGa-------AGAAGGCGgAGGu -5'
10714 3' -57.9 NC_002794.1 + 181543 0.68 0.732755
Target:  5'- cGGCggGCCGGCGCUcUCggUCGCCgggCCAa -3'
miRNA:   3'- cUCG--UGGUCGCGA-AGaaGGCGGa--GGU- -5'
10714 3' -57.9 NC_002794.1 + 153639 0.69 0.723055
Target:  5'- uGGCACgaucaCAGCGCUUacgCCGCgUCCGg -3'
miRNA:   3'- cUCGUG-----GUCGCGAAgaaGGCGgAGGU- -5'
10714 3' -57.9 NC_002794.1 + 46194 0.69 0.703436
Target:  5'- cGGCACC-GCGCUcgCUcgCCGCCguUCCGg -3'
miRNA:   3'- cUCGUGGuCGCGAa-GAa-GGCGG--AGGU- -5'
10714 3' -57.9 NC_002794.1 + 12611 0.69 0.693535
Target:  5'- -cGcCACCAGCGCgUCUggggCCGCUUCgAg -3'
miRNA:   3'- cuC-GUGGUCGCGaAGAa---GGCGGAGgU- -5'
10714 3' -57.9 NC_002794.1 + 60650 0.69 0.683584
Target:  5'- cGGCGCCggccacccGGCGCgcgccgCcgCCGCCUCCGu -3'
miRNA:   3'- cUCGUGG--------UCGCGaa----GaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 99272 0.69 0.673591
Target:  5'- gGGGCuCCGGCGCgcucccgggcUCUUCCGCgaCCGc -3'
miRNA:   3'- -CUCGuGGUCGCGa---------AGAAGGCGgaGGU- -5'
10714 3' -57.9 NC_002794.1 + 144726 0.7 0.663566
Target:  5'- uGAGCugCAGC---UCUUCCGCCagcauuUCCAc -3'
miRNA:   3'- -CUCGugGUCGcgaAGAAGGCGG------AGGU- -5'
10714 3' -57.9 NC_002794.1 + 62765 0.7 0.6233
Target:  5'- cGGCuCCGGCuGUUUCgccgcgcgCCGCCUCCGg -3'
miRNA:   3'- cUCGuGGUCG-CGAAGaa------GGCGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.