miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 5' -60.7 NC_002794.1 + 26640 0.66 0.800069
Target:  5'- cCGCGCacccgGACGGCGGccggcucguCGGCGGgguggaGCGCc -3'
miRNA:   3'- -GCGCGg----CUGCCGCUu--------GCCGCC------UGUGa -5'
10714 5' -60.7 NC_002794.1 + 8756 0.66 0.800069
Target:  5'- gGCGUgucgCGACGGCGugaaGACGGCGuGGgaGCUg -3'
miRNA:   3'- gCGCG----GCUGCCGC----UUGCCGC-CUg-UGA- -5'
10714 5' -60.7 NC_002794.1 + 179990 0.66 0.800069
Target:  5'- gGCGgUGGCcGCG-ACGGCGGGCcCg -3'
miRNA:   3'- gCGCgGCUGcCGCuUGCCGCCUGuGa -5'
10714 5' -60.7 NC_002794.1 + 118639 0.66 0.800069
Target:  5'- uGCGCCagcuCGGCGgccagcucguccGugGGCGcGACGCc -3'
miRNA:   3'- gCGCGGcu--GCCGC------------UugCCGC-CUGUGa -5'
10714 5' -60.7 NC_002794.1 + 91869 0.66 0.800069
Target:  5'- gGUcCCGGgGGUGGcgGCGGCGGcCGCg -3'
miRNA:   3'- gCGcGGCUgCCGCU--UGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 184646 0.66 0.800069
Target:  5'- uCGCGUCGGCGGCGuagcAACGGCu------ -3'
miRNA:   3'- -GCGCGGCUGCCGC----UUGCCGccuguga -5'
10714 5' -60.7 NC_002794.1 + 36 0.66 0.800069
Target:  5'- gGcCGCCGcgggcucuCGGaCGAACGGCcGACGCc -3'
miRNA:   3'- gC-GCGGCu-------GCC-GCUUGCCGcCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 145875 0.66 0.800069
Target:  5'- cCGCGaCCgGACcGCGAgaaGCGGCGaGCGCg -3'
miRNA:   3'- -GCGC-GG-CUGcCGCU---UGCCGCcUGUGa -5'
10714 5' -60.7 NC_002794.1 + 54460 0.66 0.800069
Target:  5'- gCGCGaCCGGacaccuUGGgGAugAUGGCGGugGCg -3'
miRNA:   3'- -GCGC-GGCU------GCCgCU--UGCCGCCugUGa -5'
10714 5' -60.7 NC_002794.1 + 52762 0.66 0.799225
Target:  5'- cCGCGCCG-CGGCccGGGCcGCGGgaucgugACGCUc -3'
miRNA:   3'- -GCGCGGCuGCCG--CUUGcCGCC-------UGUGA- -5'
10714 5' -60.7 NC_002794.1 + 138760 0.66 0.791565
Target:  5'- gGgGCCGagucGCGGCGGuCGGUGGAgGg- -3'
miRNA:   3'- gCgCGGC----UGCCGCUuGCCGCCUgUga -5'
10714 5' -60.7 NC_002794.1 + 72436 0.66 0.791565
Target:  5'- --aGCCGGCGGagGGAcCGGCGG-CGCc -3'
miRNA:   3'- gcgCGGCUGCCg-CUU-GCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 67413 0.66 0.791565
Target:  5'- aGCGUCGGCGccaGCGucgGCGGCGuGuCGCg -3'
miRNA:   3'- gCGCGGCUGC---CGCu--UGCCGC-CuGUGa -5'
10714 5' -60.7 NC_002794.1 + 140018 0.66 0.791565
Target:  5'- cCGCggagGCCG-CGGCccccgcGGGCGGCGGgagACACg -3'
miRNA:   3'- -GCG----CGGCuGCCG------CUUGCCGCC---UGUGa -5'
10714 5' -60.7 NC_002794.1 + 185625 0.66 0.790707
Target:  5'- aGCGaCGGCGaGCGAgacucgaGCGGCGGAa--- -3'
miRNA:   3'- gCGCgGCUGC-CGCU-------UGCCGCCUguga -5'
10714 5' -60.7 NC_002794.1 + 38473 0.66 0.790707
Target:  5'- gCGCGCCcuuuaugGGCGGagGAagcGCGGCGG-CGCc -3'
miRNA:   3'- -GCGCGG-------CUGCCg-CU---UGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 12394 0.66 0.782932
Target:  5'- uCGCcugGCCGACaaccgcacGCGGACGGCGcGCGCc -3'
miRNA:   3'- -GCG---CGGCUGc-------CGCUUGCCGCcUGUGa -5'
10714 5' -60.7 NC_002794.1 + 84119 0.66 0.782932
Target:  5'- cCGCGCCGcCGcGCccGAcCGcacGCGGACACg -3'
miRNA:   3'- -GCGCGGCuGC-CG--CUuGC---CGCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 72461 0.66 0.782932
Target:  5'- cCGCGCC--CGGCcccGCGGCGG-CGCc -3'
miRNA:   3'- -GCGCGGcuGCCGcu-UGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 190992 0.66 0.782932
Target:  5'- gCGCGgCGACGGCGucgcgauCGGCcguucgaucGGCACg -3'
miRNA:   3'- -GCGCgGCUGCCGCuu-----GCCGc--------CUGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.