miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10715 5' -54.9 NC_002794.1 + 89352 0.66 0.968942
Target:  5'- -cCUCCGAGgacucgguguGCGaAAGCgagcCGUUUCGGGa -3'
miRNA:   3'- caGAGGCUC----------UGC-UUCGa---GCAGAGCCU- -5'
10715 5' -54.9 NC_002794.1 + 110346 0.66 0.962637
Target:  5'- gGUCUCCGccguGGCGAcGcCUCGUCgucgUCGGc -3'
miRNA:   3'- -CAGAGGCu---CUGCUuC-GAGCAG----AGCCu -5'
10715 5' -54.9 NC_002794.1 + 67886 0.66 0.959172
Target:  5'- -gCUCCGAG-CGGAcucccccucGCcCGUCUCGGc -3'
miRNA:   3'- caGAGGCUCuGCUU---------CGaGCAGAGCCu -5'
10715 5' -54.9 NC_002794.1 + 105468 0.67 0.951593
Target:  5'- -gUUCUGGGACGAcgAGCcgUCGUCUcCGGu -3'
miRNA:   3'- caGAGGCUCUGCU--UCG--AGCAGA-GCCu -5'
10715 5' -54.9 NC_002794.1 + 80740 0.67 0.951593
Target:  5'- -cCUCCGcGACGggGUcCGggccacgcgCUCGGAc -3'
miRNA:   3'- caGAGGCuCUGCuuCGaGCa--------GAGCCU- -5'
10715 5' -54.9 NC_002794.1 + 44192 0.67 0.949972
Target:  5'- -aCUCCG-GGCGAAGC-CGggccgacguccggCUCGGGc -3'
miRNA:   3'- caGAGGCuCUGCUUCGaGCa------------GAGCCU- -5'
10715 5' -54.9 NC_002794.1 + 30822 0.67 0.947472
Target:  5'- cUCUUCGAacGACGucuGGCUgGUCggCGGAg -3'
miRNA:   3'- cAGAGGCU--CUGCu--UCGAgCAGa-GCCU- -5'
10715 5' -54.9 NC_002794.1 + 123202 0.68 0.928714
Target:  5'- cGUCUCgGAGAUGGAccuGUacaUCGUCUCGa- -3'
miRNA:   3'- -CAGAGgCUCUGCUU---CG---AGCAGAGCcu -5'
10715 5' -54.9 NC_002794.1 + 51078 0.68 0.923449
Target:  5'- -cCUCCGAG-CGuGGCgCG-CUCGGAa -3'
miRNA:   3'- caGAGGCUCuGCuUCGaGCaGAGCCU- -5'
10715 5' -54.9 NC_002794.1 + 41317 0.68 0.917953
Target:  5'- gGUCUCCGAGGucucCGAGGuCUCcUC-CGGGg -3'
miRNA:   3'- -CAGAGGCUCU----GCUUC-GAGcAGaGCCU- -5'
10715 5' -54.9 NC_002794.1 + 160303 0.69 0.893682
Target:  5'- -gCUCUG-GugGAuGUUCGUCUUGGGg -3'
miRNA:   3'- caGAGGCuCugCUuCGAGCAGAGCCU- -5'
10715 5' -54.9 NC_002794.1 + 35126 0.7 0.850744
Target:  5'- gGUCUgggugcacaCCGAGACGGggcAGCUCGUgUCGa- -3'
miRNA:   3'- -CAGA---------GGCUCUGCU---UCGAGCAgAGCcu -5'
10715 5' -54.9 NC_002794.1 + 136954 0.7 0.850744
Target:  5'- aGUCcCCGcaggGGACGGugacgAGCUCGUCgCGGAa -3'
miRNA:   3'- -CAGaGGC----UCUGCU-----UCGAGCAGaGCCU- -5'
10715 5' -54.9 NC_002794.1 + 10830 0.76 0.527869
Target:  5'- -gCUCCGAGACGGcgcccuGCUCGUCacgcucgacccUCGGAa -3'
miRNA:   3'- caGAGGCUCUGCUu-----CGAGCAG-----------AGCCU- -5'
10715 5' -54.9 NC_002794.1 + 180986 0.83 0.244485
Target:  5'- -aCUCCGAGACGGAGCUCGUCUn--- -3'
miRNA:   3'- caGAGGCUCUGCUUCGAGCAGAgccu -5'
10715 5' -54.9 NC_002794.1 + 181007 0.91 0.080704
Target:  5'- -cCUCCGAGGCGAAGCUCGUCUCcGAa -3'
miRNA:   3'- caGAGGCUCUGCUUCGAGCAGAGcCU- -5'
10715 5' -54.9 NC_002794.1 + 181041 1.09 0.005017
Target:  5'- cGUCUCCGAGACGAAGCUCGUCUCGGAg -3'
miRNA:   3'- -CAGAGGCUCUGCUUCGAGCAGAGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.