Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10716 | 3' | -56.4 | NC_002794.1 | + | 140122 | 0.71 | 0.7269 |
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Target: 5'- cGGuCGACGGUGgGCgGGUGGGGAa-- -3' miRNA: 3'- aCC-GCUGCUACaUGgCCACUCCUccu -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 143225 | 0.67 | 0.904793 |
|
Target: 5'- gUGGCggaaccacaggaaGACGGUGUcguCgUGGUGcAGGAGGAa -3' miRNA: 3'- -ACCG-------------CUGCUACAu--G-GCCAC-UCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 146649 | 0.71 | 0.715302 |
|
Target: 5'- cGGCGACGAacacgagccguUGCUGGacGAGGAGGAc -3' miRNA: 3'- aCCGCUGCUac---------AUGGCCa-CUCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 149509 | 0.69 | 0.79977 |
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Target: 5'- aUGGUGACGggGUcgucGCCGG-GAgcggaccuggggcGGAGGAu -3' miRNA: 3'- -ACCGCUGCuaCA----UGGCCaCU-------------CCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 158152 | 0.68 | 0.839918 |
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Target: 5'- cGGCGACGAggggaagGUccacggugagcggaACCgcgaugGGUGAGGGGGu -3' miRNA: 3'- aCCGCUGCUa------CA--------------UGG------CCACUCCUCCu -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 177900 | 0.67 | 0.886244 |
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Target: 5'- cGcGCGGuCGGUuUAUCGGgGAGGAGGGu -3' miRNA: 3'- aC-CGCU-GCUAcAUGGCCaCUCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 178352 | 1.09 | 0.003997 |
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Target: 5'- gUGGCGACGAUGUACCGGUGAGGAGGAc -3' miRNA: 3'- -ACCGCUGCUACAUGGCCACUCCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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