miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10716 3' -56.4 NC_002794.1 + 108334 0.68 0.857737
Target:  5'- cGGCGGCGcaggaggagGUGgcggAgCGGggagcgGAGGAGGAc -3'
miRNA:   3'- aCCGCUGC---------UACa---UgGCCa-----CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 107621 0.67 0.892848
Target:  5'- cGGgGACGGUGg--CGGUGAcgaaGAGGAg -3'
miRNA:   3'- aCCgCUGCUACaugGCCACUc---CUCCU- -5'
10716 3' -56.4 NC_002794.1 + 107546 0.75 0.482386
Target:  5'- cGGCGGCGAcg-ACCGcGgugGGGGAGGAg -3'
miRNA:   3'- aCCGCUGCUacaUGGC-Ca--CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 102188 0.66 0.937658
Target:  5'- cGGCGAgGAccUGgcgGCCGccGUGAcGGAGGc -3'
miRNA:   3'- aCCGCUgCU--ACa--UGGC--CACU-CCUCCu -5'
10716 3' -56.4 NC_002794.1 + 101274 0.71 0.717242
Target:  5'- cGGCGcCGGUGgcggCGGcGGGGAGGAg -3'
miRNA:   3'- aCCGCuGCUACaug-GCCaCUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 100456 0.66 0.932849
Target:  5'- cGGCGGCGgcGccuucCCGGUGGcGGAGa- -3'
miRNA:   3'- aCCGCUGCuaCau---GGCCACU-CCUCcu -5'
10716 3' -56.4 NC_002794.1 + 95890 0.66 0.942241
Target:  5'- cGGCGGCGAgGgcgcacgACgUGGUGcGGGAGGu -3'
miRNA:   3'- aCCGCUGCUaCa------UG-GCCAC-UCCUCCu -5'
10716 3' -56.4 NC_002794.1 + 95839 0.68 0.842297
Target:  5'- cGGCGGCGGcg-GCCGGgGAGGcGGc -3'
miRNA:   3'- aCCGCUGCUacaUGGCCaCUCCuCCu -5'
10716 3' -56.4 NC_002794.1 + 94225 0.71 0.707515
Target:  5'- cGGCGACGGgcgGgcggGCCGGUGAcGGAc-- -3'
miRNA:   3'- aCCGCUGCUa--Ca---UGGCCACU-CCUccu -5'
10716 3' -56.4 NC_002794.1 + 94151 0.8 0.277595
Target:  5'- cGGCGGCGcUGga-CGGUGGGGGGGAc -3'
miRNA:   3'- aCCGCUGCuACaugGCCACUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 94050 0.7 0.77385
Target:  5'- cGGCGGCGGUGcgggGgCGGcGGGGGGcGAg -3'
miRNA:   3'- aCCGCUGCUACa---UgGCCaCUCCUC-CU- -5'
10716 3' -56.4 NC_002794.1 + 90978 0.72 0.668083
Target:  5'- cGGCGugGccucGUACCGGgccGAGGcGGAg -3'
miRNA:   3'- aCCGCugCua--CAUGGCCa--CUCCuCCU- -5'
10716 3' -56.4 NC_002794.1 + 87265 0.66 0.942241
Target:  5'- gGGUGGgGGUGcagGCCGGgcgggugGGGGuGGGg -3'
miRNA:   3'- aCCGCUgCUACa--UGGCCa------CUCCuCCU- -5'
10716 3' -56.4 NC_002794.1 + 87004 0.68 0.857737
Target:  5'- cGGCGGCGuggGUuCCGGcGAGGguccgcAGGAu -3'
miRNA:   3'- aCCGCUGCua-CAuGGCCaCUCC------UCCU- -5'
10716 3' -56.4 NC_002794.1 + 79984 0.7 0.755372
Target:  5'- cGGCGACGAgga---GGcgGAGGAGGAc -3'
miRNA:   3'- aCCGCUGCUacauggCCa-CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 66617 0.69 0.809295
Target:  5'- gGGUGAUGAUaggcgGUGgCGG-GAGGAGGu -3'
miRNA:   3'- aCCGCUGCUA-----CAUgGCCaCUCCUCCu -5'
10716 3' -56.4 NC_002794.1 + 65172 0.7 0.764667
Target:  5'- gUGGCGcCGAgaccggcggGUGCCGGcGAGGucGGAc -3'
miRNA:   3'- -ACCGCuGCUa--------CAUGGCCaCUCCu-CCU- -5'
10716 3' -56.4 NC_002794.1 + 55277 0.66 0.937658
Target:  5'- gGGCGGCGGUGg--CGGcGAcGAGGGc -3'
miRNA:   3'- aCCGCUGCUACaugGCCaCUcCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 51257 0.69 0.817794
Target:  5'- aGGCGugGggGcggGCCGG-GAGGcAGGc -3'
miRNA:   3'- aCCGCugCuaCa--UGGCCaCUCC-UCCu -5'
10716 3' -56.4 NC_002794.1 + 50588 0.68 0.865168
Target:  5'- cGGCGGCugGGUG-GCCGGcGccGGGGGGAu -3'
miRNA:   3'- aCCGCUG--CUACaUGGCCaC--UCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.