Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10716 | 3' | -56.4 | NC_002794.1 | + | 139633 | 0.68 | 0.8724 |
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Target: 5'- gUGGCGAagcccaCGGUGcaGCUGGUGuaguacAGGAGGGa -3' miRNA: 3'- -ACCGCU------GCUACa-UGGCCAC------UCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 116018 | 0.68 | 0.8724 |
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Target: 5'- cGGUGGCGAuUGgcgcggggACCGGaGAGGAGa- -3' miRNA: 3'- aCCGCUGCU-ACa-------UGGCCaCUCCUCcu -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 50588 | 0.68 | 0.865168 |
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Target: 5'- cGGCGGCugGGUG-GCCGGcGccGGGGGGAu -3' miRNA: 3'- aCCGCUG--CUACaUGGCCaC--UCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 177900 | 0.67 | 0.886244 |
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Target: 5'- cGcGCGGuCGGUuUAUCGGgGAGGAGGGu -3' miRNA: 3'- aC-CGCU-GCUAcAUGGCCaCUCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 18821 | 0.68 | 0.879427 |
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Target: 5'- cGGCGACcucg-GCCGGcGcGGAGGAg -3' miRNA: 3'- aCCGCUGcuacaUGGCCaCuCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 5809 | 0.68 | 0.879427 |
|
Target: 5'- cGGUGA-GAcc--CCGGUGGGGGGGGg -3' miRNA: 3'- aCCGCUgCUacauGGCCACUCCUCCU- -5' |
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| 10716 | 3' | -56.4 | NC_002794.1 | + | 95890 | 0.66 | 0.942241 |
|
Target: 5'- cGGCGGCGAgGgcgcacgACgUGGUGcGGGAGGu -3' miRNA: 3'- aCCGCUGCUaCa------UG-GCCAC-UCCUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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