Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10716 | 3' | -56.4 | NC_002794.1 | + | 5809 | 0.68 | 0.879427 |
Target: 5'- cGGUGA-GAcc--CCGGUGGGGGGGGg -3' miRNA: 3'- aCCGCUgCUacauGGCCACUCCUCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 18821 | 0.68 | 0.879427 |
Target: 5'- cGGCGACcucg-GCCGGcGcGGAGGAg -3' miRNA: 3'- aCCGCUGcuacaUGGCCaCuCCUCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 32579 | 0.66 | 0.942241 |
Target: 5'- cGcGCGGCGGUGccgggGCCGGggccGGGGccGGGGc -3' miRNA: 3'- aC-CGCUGCUACa----UGGCCa---CUCC--UCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 38435 | 0.7 | 0.745973 |
Target: 5'- aUGGCGGCGG---GCCGGacUGAGGAGc- -3' miRNA: 3'- -ACCGCUGCUacaUGGCC--ACUCCUCcu -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 42964 | 0.67 | 0.892848 |
Target: 5'- cGGCGugGAUGUaggccaGCUGGUGcgccAGGAu -3' miRNA: 3'- aCCGCugCUACA------UGGCCACucc-UCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 44245 | 0.67 | 0.913656 |
Target: 5'- gGGCGGCucgGUGCCGGgcggcucggccgccGGGGAcGGAg -3' miRNA: 3'- aCCGCUGcuaCAUGGCCa-------------CUCCU-CCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 44721 | 0.66 | 0.92255 |
Target: 5'- cGGCGACGucg-GCCGGcGccgccGGAGGGc -3' miRNA: 3'- aCCGCUGCuacaUGGCCaCu----CCUCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 50588 | 0.68 | 0.865168 |
Target: 5'- cGGCGGCugGGUG-GCCGGcGccGGGGGGAu -3' miRNA: 3'- aCCGCUG--CUACaUGGCCaC--UCCUCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 51257 | 0.69 | 0.817794 |
Target: 5'- aGGCGugGggGcggGCCGG-GAGGcAGGc -3' miRNA: 3'- aCCGCugCuaCa--UGGCCaCUCC-UCCu -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 55277 | 0.66 | 0.937658 |
Target: 5'- gGGCGGCGGUGg--CGGcGAcGAGGGc -3' miRNA: 3'- aCCGCUGCUACaugGCCaCUcCUCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 65172 | 0.7 | 0.764667 |
Target: 5'- gUGGCGcCGAgaccggcggGUGCCGGcGAGGucGGAc -3' miRNA: 3'- -ACCGCuGCUa--------CAUGGCCaCUCCu-CCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 66617 | 0.69 | 0.809295 |
Target: 5'- gGGUGAUGAUaggcgGUGgCGG-GAGGAGGu -3' miRNA: 3'- aCCGCUGCUA-----CAUgGCCaCUCCUCCu -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 79984 | 0.7 | 0.755372 |
Target: 5'- cGGCGACGAgga---GGcgGAGGAGGAc -3' miRNA: 3'- aCCGCUGCUacauggCCa-CUCCUCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 87004 | 0.68 | 0.857737 |
Target: 5'- cGGCGGCGuggGUuCCGGcGAGGguccgcAGGAu -3' miRNA: 3'- aCCGCUGCua-CAuGGCCaCUCC------UCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 87265 | 0.66 | 0.942241 |
Target: 5'- gGGUGGgGGUGcagGCCGGgcgggugGGGGuGGGg -3' miRNA: 3'- aCCGCUgCUACa--UGGCCa------CUCCuCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 90978 | 0.72 | 0.668083 |
Target: 5'- cGGCGugGccucGUACCGGgccGAGGcGGAg -3' miRNA: 3'- aCCGCugCua--CAUGGCCa--CUCCuCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 94050 | 0.7 | 0.77385 |
Target: 5'- cGGCGGCGGUGcgggGgCGGcGGGGGGcGAg -3' miRNA: 3'- aCCGCUGCUACa---UgGCCaCUCCUC-CU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 94151 | 0.8 | 0.277595 |
Target: 5'- cGGCGGCGcUGga-CGGUGGGGGGGAc -3' miRNA: 3'- aCCGCUGCuACaugGCCACUCCUCCU- -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 94225 | 0.71 | 0.707515 |
Target: 5'- cGGCGACGGgcgGgcggGCCGGUGAcGGAc-- -3' miRNA: 3'- aCCGCUGCUa--Ca---UGGCCACU-CCUccu -5' |
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10716 | 3' | -56.4 | NC_002794.1 | + | 95839 | 0.68 | 0.842297 |
Target: 5'- cGGCGGCGGcg-GCCGGgGAGGcGGc -3' miRNA: 3'- aCCGCUGCUacaUGGCCaCUCCuCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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