miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10716 3' -56.4 NC_002794.1 + 108334 0.68 0.857737
Target:  5'- cGGCGGCGcaggaggagGUGgcggAgCGGggagcgGAGGAGGAc -3'
miRNA:   3'- aCCGCUGC---------UACa---UgGCCa-----CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 112757 0.68 0.850111
Target:  5'- cGGCGGCGggGUcggGGUGAGGucucGGAg -3'
miRNA:   3'- aCCGCUGCuaCAuggCCACUCCu---CCU- -5'
10716 3' -56.4 NC_002794.1 + 109166 0.68 0.850111
Target:  5'- aUGGCGACGAgcggcgGUAgCGGcgGAGGcagcGGGu -3'
miRNA:   3'- -ACCGCUGCUa-----CAUgGCCa-CUCCu---CCU- -5'
10716 3' -56.4 NC_002794.1 + 95839 0.68 0.842297
Target:  5'- cGGCGGCGGcg-GCCGGgGAGGcGGc -3'
miRNA:   3'- aCCGCUGCUacaUGGCCaCUCCuCCu -5'
10716 3' -56.4 NC_002794.1 + 158152 0.68 0.839918
Target:  5'- cGGCGACGAggggaagGUccacggugagcggaACCgcgaugGGUGAGGGGGu -3'
miRNA:   3'- aCCGCUGCUa------CA--------------UGG------CCACUCCUCCu -5'
10716 3' -56.4 NC_002794.1 + 51257 0.69 0.817794
Target:  5'- aGGCGugGggGcggGCCGG-GAGGcAGGc -3'
miRNA:   3'- aCCGCugCuaCa--UGGCCaCUCC-UCCu -5'
10716 3' -56.4 NC_002794.1 + 66617 0.69 0.809295
Target:  5'- gGGUGAUGAUaggcgGUGgCGG-GAGGAGGu -3'
miRNA:   3'- aCCGCUGCUA-----CAUgGCCaCUCCUCCu -5'
10716 3' -56.4 NC_002794.1 + 120139 0.69 0.809295
Target:  5'- cGGgGACGGgccgGUGCCGGacGAcGAGGAc -3'
miRNA:   3'- aCCgCUGCUa---CAUGGCCa-CUcCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 149509 0.69 0.79977
Target:  5'- aUGGUGACGggGUcgucGCCGG-GAgcggaccuggggcGGAGGAu -3'
miRNA:   3'- -ACCGCUGCuaCA----UGGCCaCU-------------CCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 126735 0.7 0.795382
Target:  5'- gUGGgGACGGUGggaCGGUGGuggugucgggaacguGGGGGAa -3'
miRNA:   3'- -ACCgCUGCUACaugGCCACU---------------CCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 120051 0.7 0.782913
Target:  5'- cGGCGGCGGUGgcgGCCGcG-GAGGccGAc -3'
miRNA:   3'- aCCGCUGCUACa--UGGC-CaCUCCucCU- -5'
10716 3' -56.4 NC_002794.1 + 94050 0.7 0.77385
Target:  5'- cGGCGGCGGUGcgggGgCGGcGGGGGGcGAg -3'
miRNA:   3'- aCCGCUGCUACa---UgGCCaCUCCUC-CU- -5'
10716 3' -56.4 NC_002794.1 + 139516 0.7 0.77385
Target:  5'- aUGGCGAUGA---ACCaGGUGAGcccGAGGAu -3'
miRNA:   3'- -ACCGCUGCUacaUGG-CCACUC---CUCCU- -5'
10716 3' -56.4 NC_002794.1 + 109111 0.7 0.768354
Target:  5'- cGGCGGuuucgGUGCCGGUguuuccgaacggaccGAGGAGGGg -3'
miRNA:   3'- aCCGCUgcua-CAUGGCCA---------------CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 65172 0.7 0.764667
Target:  5'- gUGGCGcCGAgaccggcggGUGCCGGcGAGGucGGAc -3'
miRNA:   3'- -ACCGCuGCUa--------CAUGGCCaCUCCu-CCU- -5'
10716 3' -56.4 NC_002794.1 + 79984 0.7 0.755372
Target:  5'- cGGCGACGAgga---GGcgGAGGAGGAc -3'
miRNA:   3'- aCCGCUGCUacauggCCa-CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 38435 0.7 0.745973
Target:  5'- aUGGCGGCGG---GCCGGacUGAGGAGc- -3'
miRNA:   3'- -ACCGCUGCUacaUGGCC--ACUCCUCcu -5'
10716 3' -56.4 NC_002794.1 + 129080 0.7 0.745973
Target:  5'- cUGGCGGCGGaccGU-CCGGUG-GGuGGAc -3'
miRNA:   3'- -ACCGCUGCUa--CAuGGCCACuCCuCCU- -5'
10716 3' -56.4 NC_002794.1 + 140122 0.71 0.7269
Target:  5'- cGGuCGACGGUGgGCgGGUGGGGAa-- -3'
miRNA:   3'- aCC-GCUGCUACaUGgCCACUCCUccu -5'
10716 3' -56.4 NC_002794.1 + 101274 0.71 0.717242
Target:  5'- cGGCGcCGGUGgcggCGGcGGGGAGGAg -3'
miRNA:   3'- aCCGCuGCUACaug-GCCaCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.