miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10716 5' -57.8 NC_002794.1 + 113361 0.66 0.900495
Target:  5'- gGCgUUUCCCggaACGGGUGCGggccgcCGUCGu -3'
miRNA:   3'- -UGaGGAGGGag-UGCCCACGUa-----GCAGC- -5'
10716 5' -57.8 NC_002794.1 + 138865 0.67 0.852151
Target:  5'- gACUCuCggCCUCGCGGGa--GUCGUCGc -3'
miRNA:   3'- -UGAG-GagGGAGUGCCCacgUAGCAGC- -5'
10716 5' -57.8 NC_002794.1 + 62671 0.69 0.749497
Target:  5'- cCUCCUCgagaaccgCCU-GCGGGUGCAgcugUGUCGg -3'
miRNA:   3'- uGAGGAG--------GGAgUGCCCACGUa---GCAGC- -5'
10716 5' -57.8 NC_002794.1 + 146227 0.7 0.711511
Target:  5'- -gUCCUCCUcggUCGCGGcGUcGuCAUCGUCGu -3'
miRNA:   3'- ugAGGAGGG---AGUGCC-CA-C-GUAGCAGC- -5'
10716 5' -57.8 NC_002794.1 + 91031 0.7 0.681349
Target:  5'- aGCUCUgggcggCCCUCgggguggACGGGgcgcGCGUCGUCa -3'
miRNA:   3'- -UGAGGa-----GGGAG-------UGCCCa---CGUAGCAGc -5'
10716 5' -57.8 NC_002794.1 + 21750 0.71 0.646869
Target:  5'- uGCgCCUCCCUcCACGGGaucgagaagccacgGCuUCGUCGg -3'
miRNA:   3'- -UGaGGAGGGA-GUGCCCa-------------CGuAGCAGC- -5'
10716 5' -57.8 NC_002794.1 + 90529 0.71 0.623128
Target:  5'- cGCUCgUCUC-CGCGGGUGaCGUCGUg- -3'
miRNA:   3'- -UGAGgAGGGaGUGCCCAC-GUAGCAgc -5'
10716 5' -57.8 NC_002794.1 + 195019 0.72 0.564138
Target:  5'- aACUCCUCgaagUCGCGcgccgccaGGUGCAUCGUCGu -3'
miRNA:   3'- -UGAGGAGgg--AGUGC--------CCACGUAGCAGC- -5'
10716 5' -57.8 NC_002794.1 + 6721 0.75 0.39973
Target:  5'- uGCUCUgCCCUCaggaaauGCGGGagaUGCAUCGUCGc -3'
miRNA:   3'- -UGAGGaGGGAG-------UGCCC---ACGUAGCAGC- -5'
10716 5' -57.8 NC_002794.1 + 131606 0.77 0.328676
Target:  5'- gACUCCUCCCcugaucaccaccucUCcCGGGaGCGUCGUCGc -3'
miRNA:   3'- -UGAGGAGGG--------------AGuGCCCaCGUAGCAGC- -5'
10716 5' -57.8 NC_002794.1 + 178386 1.07 0.003527
Target:  5'- gACUCCUCCCUCACGGGUGCAUCGUCGc -3'
miRNA:   3'- -UGAGGAGGGAGUGCCCACGUAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.