miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10717 3' -54 NC_002794.1 + 66627 0.66 0.983416
Target:  5'- aGGcGGugGCGGGAGGaggucCGUccGGGGGCaUCg -3'
miRNA:   3'- -CC-CCugUGCUCUCU-----GCAa-CUCCUG-AG- -5'
10717 3' -54 NC_002794.1 + 116412 0.66 0.981467
Target:  5'- cGGGGCGCGAGcaccaGGGCGcgGgucAGGACg- -3'
miRNA:   3'- cCCCUGUGCUC-----UCUGCaaC---UCCUGag -5'
10717 3' -54 NC_002794.1 + 115860 0.66 0.981467
Target:  5'- uGGGACGCGcGAGGgGUccGGGGCg- -3'
miRNA:   3'- cCCCUGUGCuCUCUgCAacUCCUGag -5'
10717 3' -54 NC_002794.1 + 107604 0.66 0.979353
Target:  5'- gGGGGAgACGGGgaAGACG---GGGACg- -3'
miRNA:   3'- -CCCCUgUGCUC--UCUGCaacUCCUGag -5'
10717 3' -54 NC_002794.1 + 156469 0.66 0.977064
Target:  5'- aGGGG--GCGGGGGACGacgGGGcGGCUUu -3'
miRNA:   3'- -CCCCugUGCUCUCUGCaa-CUC-CUGAG- -5'
10717 3' -54 NC_002794.1 + 149462 0.66 0.974594
Target:  5'- aGGGGGCGguCGAGGaGCGaggGGGGGCg- -3'
miRNA:   3'- -CCCCUGU--GCUCUcUGCaa-CUCCUGag -5'
10717 3' -54 NC_002794.1 + 140039 0.66 0.974594
Target:  5'- cGGGcGGCGgGAGAcACGgaaaGGGGCUCa -3'
miRNA:   3'- -CCC-CUGUgCUCUcUGCaac-UCCUGAG- -5'
10717 3' -54 NC_002794.1 + 118994 0.67 0.971935
Target:  5'- -cGGGCGCgGGGAGACGagGGGGAa-- -3'
miRNA:   3'- ccCCUGUG-CUCUCUGCaaCUCCUgag -5'
10717 3' -54 NC_002794.1 + 115887 0.67 0.962768
Target:  5'- cGGGGcguccgcggaGCGCGGGGGGuuCGUgggGuGGACUUg -3'
miRNA:   3'- -CCCC----------UGUGCUCUCU--GCAa--CuCCUGAG- -5'
10717 3' -54 NC_002794.1 + 110293 0.67 0.955607
Target:  5'- -cGGGCcCGAGAGcCGc-GGGGACUCu -3'
miRNA:   3'- ccCCUGuGCUCUCuGCaaCUCCUGAG- -5'
10717 3' -54 NC_002794.1 + 149349 0.69 0.923452
Target:  5'- cGGGGuCGCG-GGGGCGUgGAcGGAgUCc -3'
miRNA:   3'- -CCCCuGUGCuCUCUGCAaCU-CCUgAG- -5'
10717 3' -54 NC_002794.1 + 124163 0.69 0.917932
Target:  5'- cGGGGCcCGGGAGAgCGUcggggaGGGGACUg -3'
miRNA:   3'- cCCCUGuGCUCUCU-GCAa-----CUCCUGAg -5'
10717 3' -54 NC_002794.1 + 127707 0.69 0.906197
Target:  5'- uGGGACAgGAGA-ACGaUG-GGGCUCg -3'
miRNA:   3'- cCCCUGUgCUCUcUGCaACuCCUGAG- -5'
10717 3' -54 NC_002794.1 + 126718 0.7 0.886886
Target:  5'- cGGGGCGagGGGGGugGgUGGGGACg- -3'
miRNA:   3'- cCCCUGUg-CUCUCugCaACUCCUGag -5'
10717 3' -54 NC_002794.1 + 141426 0.7 0.880006
Target:  5'- cGGGGGCgGCG-GGGGCGccGGGGGCg- -3'
miRNA:   3'- -CCCCUG-UGCuCUCUGCaaCUCCUGag -5'
10717 3' -54 NC_002794.1 + 136339 0.7 0.87291
Target:  5'- -cGGugGCGGGccagcguGGCGUUGAGG-CUCa -3'
miRNA:   3'- ccCCugUGCUCu------CUGCAACUCCuGAG- -5'
10717 3' -54 NC_002794.1 + 94061 0.71 0.858093
Target:  5'- cGGGGGCgGCGGGGGGC---GAGGGCa- -3'
miRNA:   3'- -CCCCUG-UGCUCUCUGcaaCUCCUGag -5'
10717 3' -54 NC_002794.1 + 126693 0.71 0.842481
Target:  5'- cGGGGAgG-GAGGGGCGccGcGGACUCg -3'
miRNA:   3'- -CCCCUgUgCUCUCUGCaaCuCCUGAG- -5'
10717 3' -54 NC_002794.1 + 40114 0.73 0.744934
Target:  5'- cGGGGGCGCGcGAGAgCGgaGAgccacGGGCUCu -3'
miRNA:   3'- -CCCCUGUGCuCUCU-GCaaCU-----CCUGAG- -5'
10717 3' -54 NC_002794.1 + 149824 0.74 0.696054
Target:  5'- cGGGGACcCGAG-GACGggcGGGGACg- -3'
miRNA:   3'- -CCCCUGuGCUCuCUGCaa-CUCCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.