miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10717 5' -52 NC_002794.1 + 130036 0.67 0.991434
Target:  5'- aGGAGcgucCGUCAucGUCGCCGucACCGg -3'
miRNA:   3'- gCCUCa---GUAGUcuUAGUGGCucUGGC- -5'
10717 5' -52 NC_002794.1 + 137351 0.72 0.894262
Target:  5'- uCGGcGUCGUCGGggUCuucuUCGAG-CCGg -3'
miRNA:   3'- -GCCuCAGUAGUCuuAGu---GGCUCuGGC- -5'
10717 5' -52 NC_002794.1 + 137408 0.68 0.980121
Target:  5'- cCGGcGUCcgCGGAcgcCGCgGAGACCGc -3'
miRNA:   3'- -GCCuCAGuaGUCUua-GUGgCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 137540 0.73 0.863795
Target:  5'- aCGGAGUCuUCGGGcgcgaagaacGUCgcgccgccgucgccGCCGGGGCCGg -3'
miRNA:   3'- -GCCUCAGuAGUCU----------UAG--------------UGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 137780 0.67 0.987463
Target:  5'- uGGGGUCGaggugCAG-GUCGCUGAGgaGCCGc -3'
miRNA:   3'- gCCUCAGUa----GUCuUAGUGGCUC--UGGC- -5'
10717 5' -52 NC_002794.1 + 137944 0.72 0.894262
Target:  5'- uGGAGgCAgcggCGGAugcguUCGCCGAGGCCc -3'
miRNA:   3'- gCCUCaGUa---GUCUu----AGUGGCUCUGGc -5'
10717 5' -52 NC_002794.1 + 139321 0.69 0.960249
Target:  5'- aGGuagaaccaAGUCAUCAuGGUgACCGGGGCCa -3'
miRNA:   3'- gCC--------UCAGUAGUcUUAgUGGCUCUGGc -5'
10717 5' -52 NC_002794.1 + 141434 0.66 0.99251
Target:  5'- gCGGGGgCGcCGGGggCGCCGGGAgCGg -3'
miRNA:   3'- -GCCUCaGUaGUCUuaGUGGCUCUgGC- -5'
10717 5' -52 NC_002794.1 + 141977 0.66 0.99251
Target:  5'- -cGAGUCG-CAGGcgCA-CGGGACCGa -3'
miRNA:   3'- gcCUCAGUaGUCUuaGUgGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 148125 0.66 0.994339
Target:  5'- uCGGuGUCGggcgCGGGGcCGCCGGGGCg- -3'
miRNA:   3'- -GCCuCAGUa---GUCUUaGUGGCUCUGgc -5'
10717 5' -52 NC_002794.1 + 149021 0.67 0.991434
Target:  5'- cCGG-GUCAUCc---UCACCGAcucGGCCGg -3'
miRNA:   3'- -GCCuCAGUAGucuuAGUGGCU---CUGGC- -5'
10717 5' -52 NC_002794.1 + 149368 0.7 0.939585
Target:  5'- aCGGAGUCcgCcgAGAAUaaaACCGcuGACCGg -3'
miRNA:   3'- -GCCUCAGuaG--UCUUAg--UGGCu-CUGGC- -5'
10717 5' -52 NC_002794.1 + 149878 0.67 0.991434
Target:  5'- uCGGGGg-GUCuGggUCAUCGuGACCc -3'
miRNA:   3'- -GCCUCagUAGuCuuAGUGGCuCUGGc -5'
10717 5' -52 NC_002794.1 + 156185 0.84 0.330178
Target:  5'- uCGGAcgcGUCAUCGGAGUCGCCGgucggaGGGCCGg -3'
miRNA:   3'- -GCCU---CAGUAGUCUUAGUGGC------UCUGGC- -5'
10717 5' -52 NC_002794.1 + 157035 0.66 0.994339
Target:  5'- uCGuuGUCuuUCAGAGUcCGgCGAGACCGu -3'
miRNA:   3'- -GCcuCAGu-AGUCUUA-GUgGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 175845 0.7 0.948543
Target:  5'- ---cGcCGUCGGggUCGCCGAucGACCGu -3'
miRNA:   3'- gccuCaGUAGUCuuAGUGGCU--CUGGC- -5'
10717 5' -52 NC_002794.1 + 177030 1.09 0.010439
Target:  5'- uCGGAGUCAUCAGAAUCACCGAGACCGu -3'
miRNA:   3'- -GCCUCAGUAGUCUUAGUGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 177873 0.66 0.995107
Target:  5'- aCGGAG--AUCGGAacgGUUAUCaGAGACCGc -3'
miRNA:   3'- -GCCUCagUAGUCU---UAGUGG-CUCUGGC- -5'
10717 5' -52 NC_002794.1 + 187297 0.68 0.975174
Target:  5'- aCGGGGUCAccaUCAGAuaccacGUCGCgGGGuuccgcaGCCGg -3'
miRNA:   3'- -GCCUCAGU---AGUCU------UAGUGgCUC-------UGGC- -5'
10717 5' -52 NC_002794.1 + 188163 0.7 0.939585
Target:  5'- cCGG-GUCggacagGUCGGAAUCGuCCGAGauGCCGg -3'
miRNA:   3'- -GCCuCAG------UAGUCUUAGU-GGCUC--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.