miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10717 5' -52 NC_002794.1 + 177030 1.09 0.010439
Target:  5'- uCGGAGUCAUCAGAAUCACCGAGACCGu -3'
miRNA:   3'- -GCCUCAGUAGUCUUAGUGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 156185 0.84 0.330178
Target:  5'- uCGGAcgcGUCAUCGGAGUCGCCGgucggaGGGCCGg -3'
miRNA:   3'- -GCCU---CAGUAGUCUUAGUGGC------UCUGGC- -5'
10717 5' -52 NC_002794.1 + 191891 0.76 0.724286
Target:  5'- gCGGAGg---CGGGAUCggcACCGGGACCGg -3'
miRNA:   3'- -GCCUCaguaGUCUUAG---UGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 189857 0.74 0.79096
Target:  5'- gCGGAGcCGUCGGcgucGUCGCCGccGACCGg -3'
miRNA:   3'- -GCCUCaGUAGUCu---UAGUGGCu-CUGGC- -5'
10717 5' -52 NC_002794.1 + 87021 0.74 0.808858
Target:  5'- gCGaGGGUCcgCAGGAUC-CgGGGACCGg -3'
miRNA:   3'- -GC-CUCAGuaGUCUUAGuGgCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 119503 0.74 0.826116
Target:  5'- uCGGGGUCGUCGGcggCGCgGAG-CCGg -3'
miRNA:   3'- -GCCUCAGUAGUCuuaGUGgCUCuGGC- -5'
10717 5' -52 NC_002794.1 + 137540 0.73 0.863795
Target:  5'- aCGGAGUCuUCGGGcgcgaagaacGUCgcgccgccgucgccGCCGGGGCCGg -3'
miRNA:   3'- -GCCUCAGuAGUCU----------UAG--------------UGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 137944 0.72 0.894262
Target:  5'- uGGAGgCAgcggCGGAugcguUCGCCGAGGCCc -3'
miRNA:   3'- gCCUCaGUa---GUCUu----AGUGGCUCUGGc -5'
10717 5' -52 NC_002794.1 + 137351 0.72 0.894262
Target:  5'- uCGGcGUCGUCGGggUCuucuUCGAG-CCGg -3'
miRNA:   3'- -GCCuCAGUAGUCuuAGu---GGCUCuGGC- -5'
10717 5' -52 NC_002794.1 + 41343 0.71 0.918822
Target:  5'- cCGGGGUCucCGGggUCACCGccgucGGCCu -3'
miRNA:   3'- -GCCUCAGuaGUCuuAGUGGCu----CUGGc -5'
10717 5' -52 NC_002794.1 + 14386 0.71 0.918822
Target:  5'- -cGAGUCAacgUCucccGAGUCACCGAGugCa -3'
miRNA:   3'- gcCUCAGU---AGu---CUUAGUGGCUCugGc -5'
10717 5' -52 NC_002794.1 + 188163 0.7 0.939585
Target:  5'- cCGG-GUCggacagGUCGGAAUCGuCCGAGauGCCGg -3'
miRNA:   3'- -GCCuCAG------UAGUCUUAGU-GGCUC--UGGC- -5'
10717 5' -52 NC_002794.1 + 149368 0.7 0.939585
Target:  5'- aCGGAGUCcgCcgAGAAUaaaACCGcuGACCGg -3'
miRNA:   3'- -GCCUCAGuaG--UCUUAg--UGGCu-CUGGC- -5'
10717 5' -52 NC_002794.1 + 175845 0.7 0.948543
Target:  5'- ---cGcCGUCGGggUCGCCGAucGACCGu -3'
miRNA:   3'- gccuCaGUAGUCuuAGUGGCU--CUGGC- -5'
10717 5' -52 NC_002794.1 + 4170 0.7 0.952673
Target:  5'- aGGGGUCGUCGcgguGggUCGUCGAGGCa- -3'
miRNA:   3'- gCCUCAGUAGU----CuuAGUGGCUCUGgc -5'
10717 5' -52 NC_002794.1 + 15155 0.7 0.956194
Target:  5'- gCGGAGUgaaaaaCcgCAGGAgggccguUCGCCGgAGACCGg -3'
miRNA:   3'- -GCCUCA------GuaGUCUU-------AGUGGC-UCUGGC- -5'
10717 5' -52 NC_002794.1 + 139321 0.69 0.960249
Target:  5'- aGGuagaaccaAGUCAUCAuGGUgACCGGGGCCa -3'
miRNA:   3'- gCC--------UCAGUAGUcUUAgUGGCUCUGGc -5'
10717 5' -52 NC_002794.1 + 187297 0.68 0.975174
Target:  5'- aCGGGGUCAccaUCAGAuaccacGUCGCgGGGuuccgcaGCCGg -3'
miRNA:   3'- -GCCUCAGU---AGUCU------UAGUGgCUC-------UGGC- -5'
10717 5' -52 NC_002794.1 + 86077 0.68 0.975429
Target:  5'- gCGGAucUCAUCGGAccgcCGCCGGGACgGa -3'
miRNA:   3'- -GCCUc-AGUAGUCUua--GUGGCUCUGgC- -5'
10717 5' -52 NC_002794.1 + 14743 0.68 0.975429
Target:  5'- cCGGcgcGUCAUCGGAgcccgaagccGUCgaggccGCUGAGGCCGg -3'
miRNA:   3'- -GCCu--CAGUAGUCU----------UAG------UGGCUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.