Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10717 | 5' | -52 | NC_002794.1 | + | 42644 | 0.68 | 0.980551 |
Target: 5'- gCGGAGUCgcggccgaagccgacGgcgccgccggcaCGGggUaCGCCGAGACCGg -3' miRNA: 3'- -GCCUCAG---------------Ua-----------GUCuuA-GUGGCUCUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 137408 | 0.68 | 0.980121 |
Target: 5'- cCGGcGUCcgCGGAcgcCGCgGAGACCGc -3' miRNA: 3'- -GCCuCAGuaGUCUua-GUGgCUCUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 14743 | 0.68 | 0.975429 |
Target: 5'- cCGGcgcGUCAUCGGAgcccgaagccGUCgaggccGCUGAGGCCGg -3' miRNA: 3'- -GCCu--CAGUAGUCU----------UAG------UGGCUCUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 86077 | 0.68 | 0.975429 |
Target: 5'- gCGGAucUCAUCGGAccgcCGCCGGGACgGa -3' miRNA: 3'- -GCCUc-AGUAGUCUua--GUGGCUCUGgC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 187297 | 0.68 | 0.975174 |
Target: 5'- aCGGGGUCAccaUCAGAuaccacGUCGCgGGGuuccgcaGCCGg -3' miRNA: 3'- -GCCUCAGU---AGUCU------UAGUGgCUC-------UGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 139321 | 0.69 | 0.960249 |
Target: 5'- aGGuagaaccaAGUCAUCAuGGUgACCGGGGCCa -3' miRNA: 3'- gCC--------UCAGUAGUcUUAgUGGCUCUGGc -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 15155 | 0.7 | 0.956194 |
Target: 5'- gCGGAGUgaaaaaCcgCAGGAgggccguUCGCCGgAGACCGg -3' miRNA: 3'- -GCCUCA------GuaGUCUU-------AGUGGC-UCUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 4170 | 0.7 | 0.952673 |
Target: 5'- aGGGGUCGUCGcgguGggUCGUCGAGGCa- -3' miRNA: 3'- gCCUCAGUAGU----CuuAGUGGCUCUGgc -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 175845 | 0.7 | 0.948543 |
Target: 5'- ---cGcCGUCGGggUCGCCGAucGACCGu -3' miRNA: 3'- gccuCaGUAGUCuuAGUGGCU--CUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 188163 | 0.7 | 0.939585 |
Target: 5'- cCGG-GUCggacagGUCGGAAUCGuCCGAGauGCCGg -3' miRNA: 3'- -GCCuCAG------UAGUCUUAGU-GGCUC--UGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 149368 | 0.7 | 0.939585 |
Target: 5'- aCGGAGUCcgCcgAGAAUaaaACCGcuGACCGg -3' miRNA: 3'- -GCCUCAGuaG--UCUUAg--UGGCu-CUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 14386 | 0.71 | 0.918822 |
Target: 5'- -cGAGUCAacgUCucccGAGUCACCGAGugCa -3' miRNA: 3'- gcCUCAGU---AGu---CUUAGUGGCUCugGc -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 41343 | 0.71 | 0.918822 |
Target: 5'- cCGGGGUCucCGGggUCACCGccgucGGCCu -3' miRNA: 3'- -GCCUCAGuaGUCuuAGUGGCu----CUGGc -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 137944 | 0.72 | 0.894262 |
Target: 5'- uGGAGgCAgcggCGGAugcguUCGCCGAGGCCc -3' miRNA: 3'- gCCUCaGUa---GUCUu----AGUGGCUCUGGc -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 137351 | 0.72 | 0.894262 |
Target: 5'- uCGGcGUCGUCGGggUCuucuUCGAG-CCGg -3' miRNA: 3'- -GCCuCAGUAGUCuuAGu---GGCUCuGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 137540 | 0.73 | 0.863795 |
Target: 5'- aCGGAGUCuUCGGGcgcgaagaacGUCgcgccgccgucgccGCCGGGGCCGg -3' miRNA: 3'- -GCCUCAGuAGUCU----------UAG--------------UGGCUCUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 119503 | 0.74 | 0.826116 |
Target: 5'- uCGGGGUCGUCGGcggCGCgGAG-CCGg -3' miRNA: 3'- -GCCUCAGUAGUCuuaGUGgCUCuGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 87021 | 0.74 | 0.808858 |
Target: 5'- gCGaGGGUCcgCAGGAUC-CgGGGACCGg -3' miRNA: 3'- -GC-CUCAGuaGUCUUAGuGgCUCUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 189857 | 0.74 | 0.79096 |
Target: 5'- gCGGAGcCGUCGGcgucGUCGCCGccGACCGg -3' miRNA: 3'- -GCCUCaGUAGUCu---UAGUGGCu-CUGGC- -5' |
|||||||
10717 | 5' | -52 | NC_002794.1 | + | 191891 | 0.76 | 0.724286 |
Target: 5'- gCGGAGg---CGGGAUCggcACCGGGACCGg -3' miRNA: 3'- -GCCUCaguaGUCUUAG---UGGCUCUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home