miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10718 3' -57 NC_002794.1 + 107026 0.66 0.935492
Target:  5'- -cACCG-CGGCGccgCUGGGGAcccccgcgucggagGCGGCg -3'
miRNA:   3'- ccUGGCuGCCGCa--GACCUCUa-------------CGCUG- -5'
10718 3' -57 NC_002794.1 + 140126 0.66 0.928616
Target:  5'- cGACgGugGGCGggUGGGGAa-CGACg -3'
miRNA:   3'- cCUGgCugCCGCagACCUCUacGCUG- -5'
10718 3' -57 NC_002794.1 + 142400 0.66 0.928616
Target:  5'- cGGugCaGGCGGCGUCggcGGcgccGGgcGCGAUu -3'
miRNA:   3'- -CCugG-CUGCCGCAGa--CC----UCuaCGCUG- -5'
10718 3' -57 NC_002794.1 + 32871 0.66 0.928616
Target:  5'- cGGCgGGCGGCGgc-GGcGGcgGCGGCa -3'
miRNA:   3'- cCUGgCUGCCGCagaCC-UCuaCGCUG- -5'
10718 3' -57 NC_002794.1 + 101263 0.66 0.925535
Target:  5'- gGGGCCGcccccggcgccggugGCGGCGgcggGGAGGaGaCGACg -3'
miRNA:   3'- -CCUGGC---------------UGCCGCaga-CCUCUaC-GCUG- -5'
10718 3' -57 NC_002794.1 + 44300 0.66 0.923964
Target:  5'- cGGGCCGGCgaGGCGg--GGAGcgaccgcgagcgcgGCGGCg -3'
miRNA:   3'- -CCUGGCUG--CCGCagaCCUCua------------CGCUG- -5'
10718 3' -57 NC_002794.1 + 146524 0.66 0.923436
Target:  5'- gGGACCgcGACGGa-UCcGGAGGacGCGACg -3'
miRNA:   3'- -CCUGG--CUGCCgcAGaCCUCUa-CGCUG- -5'
10718 3' -57 NC_002794.1 + 182018 0.66 0.923436
Target:  5'- gGGACCc-CGGCGUCcGGGccgccgGCGACc -3'
miRNA:   3'- -CCUGGcuGCCGCAGaCCUcua---CGCUG- -5'
10718 3' -57 NC_002794.1 + 118243 0.66 0.918033
Target:  5'- aGGAUgu-CGGCGggCUGGAGGUcggccgggGCGGCg -3'
miRNA:   3'- -CCUGgcuGCCGCa-GACCUCUA--------CGCUG- -5'
10718 3' -57 NC_002794.1 + 52626 0.66 0.918033
Target:  5'- cGACCGcCGccGCGUCgaacgggagccGGAGcgGCGGCa -3'
miRNA:   3'- cCUGGCuGC--CGCAGa----------CCUCuaCGCUG- -5'
10718 3' -57 NC_002794.1 + 42578 0.66 0.918033
Target:  5'- cGGACCcGCGGaCGga-GGAGGgcGCGGCg -3'
miRNA:   3'- -CCUGGcUGCC-GCagaCCUCUa-CGCUG- -5'
10718 3' -57 NC_002794.1 + 106983 0.66 0.912408
Target:  5'- cGGCCGgcacggcggugGCGGCG-CUGGccGAcGCGACg -3'
miRNA:   3'- cCUGGC-----------UGCCGCaGACCu-CUaCGCUG- -5'
10718 3' -57 NC_002794.1 + 149335 0.66 0.912408
Target:  5'- cGGACCGAaccggcCGGgGUCgcgGGGGcGUG-GACg -3'
miRNA:   3'- -CCUGGCU------GCCgCAGa--CCUC-UACgCUG- -5'
10718 3' -57 NC_002794.1 + 62065 0.67 0.906561
Target:  5'- -cGCCGGCGGCGaCgccGGcgGCGACg -3'
miRNA:   3'- ccUGGCUGCCGCaGaccUCuaCGCUG- -5'
10718 3' -57 NC_002794.1 + 141438 0.67 0.906561
Target:  5'- gGGcGCCGGgGGCGcCgGGAGcgGCGcgGCg -3'
miRNA:   3'- -CC-UGGCUgCCGCaGaCCUCuaCGC--UG- -5'
10718 3' -57 NC_002794.1 + 91218 0.67 0.906561
Target:  5'- cGACgCGACGGCGgacGGcGcgGCGGCc -3'
miRNA:   3'- cCUG-GCUGCCGCagaCCuCuaCGCUG- -5'
10718 3' -57 NC_002794.1 + 138582 0.67 0.906561
Target:  5'- cGAUCGAgGcGCGUCggcgcggcGGAGA-GCGGCu -3'
miRNA:   3'- cCUGGCUgC-CGCAGa-------CCUCUaCGCUG- -5'
10718 3' -57 NC_002794.1 + 127984 0.67 0.900495
Target:  5'- uGGugUGGUGGUGUCUGG-GcgGaCGACc -3'
miRNA:   3'- -CCugGCUGCCGCAGACCuCuaC-GCUG- -5'
10718 3' -57 NC_002794.1 + 126272 0.67 0.900495
Target:  5'- uGGCUGGCGGCG-CUGGGcuugcuGUGCGcCg -3'
miRNA:   3'- cCUGGCUGCCGCaGACCUc-----UACGCuG- -5'
10718 3' -57 NC_002794.1 + 175580 0.67 0.899876
Target:  5'- -cGCCGGUGGUGUCagUGGAgcuuggcGAUGCGAUa -3'
miRNA:   3'- ccUGGCUGCCGCAG--ACCU-------CUACGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.