miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10718 5' -56.5 NC_002794.1 + 109122 0.66 0.944407
Target:  5'- gUGcCGGUGUUUCCGAACGgacCGA-GGAg -3'
miRNA:   3'- gAC-GCCGUAGGGGCUUGCa--GCUaCCU- -5'
10718 5' -56.5 NC_002794.1 + 16541 0.66 0.939944
Target:  5'- --cCGGCGUCCCCG-GCGUCGc---- -3'
miRNA:   3'- gacGCCGUAGGGGCuUGCAGCuaccu -5'
10718 5' -56.5 NC_002794.1 + 15216 0.66 0.939944
Target:  5'- -gGCGGCGUCCCC---CGUcCGcgGGc -3'
miRNA:   3'- gaCGCCGUAGGGGcuuGCA-GCuaCCu -5'
10718 5' -56.5 NC_002794.1 + 114221 0.66 0.939944
Target:  5'- -gGCGGCAgCCagCCGAucagcGCGUCGAggUGGu -3'
miRNA:   3'- gaCGCCGUaGG--GGCU-----UGCAGCU--ACCu -5'
10718 5' -56.5 NC_002794.1 + 145331 0.66 0.939944
Target:  5'- -gGCGGCGcUCgggCCCGAGCGggccCGAgcUGGGg -3'
miRNA:   3'- gaCGCCGU-AG---GGGCUUGCa---GCU--ACCU- -5'
10718 5' -56.5 NC_002794.1 + 118272 0.66 0.935257
Target:  5'- -gGCGGCggCgCCG-GCGUCGG-GGAc -3'
miRNA:   3'- gaCGCCGuaGgGGCuUGCAGCUaCCU- -5'
10718 5' -56.5 NC_002794.1 + 137403 0.66 0.935257
Target:  5'- uCUGUccGGCGUCCgCGGACGcCGcgGaGAc -3'
miRNA:   3'- -GACG--CCGUAGGgGCUUGCaGCuaC-CU- -5'
10718 5' -56.5 NC_002794.1 + 18708 0.66 0.935257
Target:  5'- -gGCGGCGg-UCCGGACGUCGGa--- -3'
miRNA:   3'- gaCGCCGUagGGGCUUGCAGCUaccu -5'
10718 5' -56.5 NC_002794.1 + 189671 0.66 0.929841
Target:  5'- -aGCGGUcgCCCCGGcCGggacuuuuauaauUCGAUcGGAg -3'
miRNA:   3'- gaCGCCGuaGGGGCUuGC-------------AGCUA-CCU- -5'
10718 5' -56.5 NC_002794.1 + 33220 0.66 0.925205
Target:  5'- gUGCGGCAggUCUCGGACGa--GUGGAa -3'
miRNA:   3'- gACGCCGUa-GGGGCUUGCagcUACCU- -5'
10718 5' -56.5 NC_002794.1 + 115887 0.66 0.925205
Target:  5'- -cGgGGCGUCCgCgGAGCG-CGggGGGu -3'
miRNA:   3'- gaCgCCGUAGG-GgCUUGCaGCuaCCU- -5'
10718 5' -56.5 NC_002794.1 + 89755 0.66 0.925205
Target:  5'- -cGCGGCGauuggcagCUCCGcGACGUCGG-GGAc -3'
miRNA:   3'- gaCGCCGUa-------GGGGC-UUGCAGCUaCCU- -5'
10718 5' -56.5 NC_002794.1 + 47648 0.66 0.919839
Target:  5'- -cGUGGUcgUCCCGAACGaUCGGacagUGGu -3'
miRNA:   3'- gaCGCCGuaGGGGCUUGC-AGCU----ACCu -5'
10718 5' -56.5 NC_002794.1 + 101262 0.66 0.919839
Target:  5'- -gGgGGCcgCCCCcGGCGcCGGUGGc -3'
miRNA:   3'- gaCgCCGuaGGGGcUUGCaGCUACCu -5'
10718 5' -56.5 NC_002794.1 + 128318 0.67 0.914247
Target:  5'- -cGUGGCGaccgagccCgCCCGGACG-CGGUGGAc -3'
miRNA:   3'- gaCGCCGUa-------G-GGGCUUGCaGCUACCU- -5'
10718 5' -56.5 NC_002794.1 + 132510 0.67 0.912526
Target:  5'- -gGCGGCAUCgCUGGACcUCGGuuugcauuauuauaUGGAc -3'
miRNA:   3'- gaCGCCGUAGgGGCUUGcAGCU--------------ACCU- -5'
10718 5' -56.5 NC_002794.1 + 89486 0.67 0.90843
Target:  5'- cCUGCGGUGUCuCCCGcGAUG-CGGgcaGGAg -3'
miRNA:   3'- -GACGCCGUAG-GGGC-UUGCaGCUa--CCU- -5'
10718 5' -56.5 NC_002794.1 + 10648 0.67 0.90843
Target:  5'- -aGCGGCGcgagCCCgaCGAGCGUC--UGGAg -3'
miRNA:   3'- gaCGCCGUa---GGG--GCUUGCAGcuACCU- -5'
10718 5' -56.5 NC_002794.1 + 116822 0.67 0.90239
Target:  5'- -cGCGGgucgcucugGUCCCgGGACGcgCGGUGGAu -3'
miRNA:   3'- gaCGCCg--------UAGGGgCUUGCa-GCUACCU- -5'
10718 5' -56.5 NC_002794.1 + 119787 0.67 0.896129
Target:  5'- -gGCGGCuccgGUCCgCCGAcuugaGCGUCGcGUGGc -3'
miRNA:   3'- gaCGCCG----UAGG-GGCU-----UGCAGC-UACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.