miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 32590 0.66 0.98283
Target:  5'- gCCGGggCCGG--GGCCGGggcCGGggCCg -3'
miRNA:   3'- aGGUCaaGGCCugUCGGUU---GCCaaGG- -5'
10719 3' -54 NC_002794.1 + 72264 0.66 0.980828
Target:  5'- cCCAGUUCCgcgcGGAagaAGCCGcgaaaGCGGgcgaucgcgUCCc -3'
miRNA:   3'- aGGUCAAGG----CCUg--UCGGU-----UGCCa--------AGG- -5'
10719 3' -54 NC_002794.1 + 12197 0.66 0.980828
Target:  5'- gCCGGgcgccgCuCGGACGuGCCGGCGGcgUCg -3'
miRNA:   3'- aGGUCaa----G-GCCUGU-CGGUUGCCa-AGg -5'
10719 3' -54 NC_002794.1 + 49010 0.66 0.980828
Target:  5'- cUCCcGcgCCGcGGCGGCC-GCGGcgucgUCCg -3'
miRNA:   3'- -AGGuCaaGGC-CUGUCGGuUGCCa----AGG- -5'
10719 3' -54 NC_002794.1 + 136727 0.66 0.978657
Target:  5'- cCCGGcgUCCaGGCGGUCGA-GGUUCg -3'
miRNA:   3'- aGGUCa-AGGcCUGUCGGUUgCCAAGg -5'
10719 3' -54 NC_002794.1 + 37867 0.66 0.978657
Target:  5'- cUCCGGUcggcgUCuCGGGCGGCgGggGCGGUggCg -3'
miRNA:   3'- -AGGUCA-----AG-GCCUGUCGgU--UGCCAagG- -5'
10719 3' -54 NC_002794.1 + 67220 0.66 0.976309
Target:  5'- cUCGGcgCCGGGCGGCUAAcCGcGUcucgauUCCg -3'
miRNA:   3'- aGGUCaaGGCCUGUCGGUU-GC-CA------AGG- -5'
10719 3' -54 NC_002794.1 + 184741 0.66 0.976309
Target:  5'- gCCAGgUCCGcGcCGGuCCAGC-GUUCCa -3'
miRNA:   3'- aGGUCaAGGC-CuGUC-GGUUGcCAAGG- -5'
10719 3' -54 NC_002794.1 + 102708 0.66 0.973777
Target:  5'- gCCGGgccgCCGGACGggcgcGCCAACGcg-CCc -3'
miRNA:   3'- aGGUCaa--GGCCUGU-----CGGUUGCcaaGG- -5'
10719 3' -54 NC_002794.1 + 143799 0.66 0.973777
Target:  5'- aCCAGgUCgCGuACAcGCCGuCGGUUCCc -3'
miRNA:   3'- aGGUCaAG-GCcUGU-CGGUuGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 86817 0.66 0.973513
Target:  5'- aUCCAGggCCGcGACcucgccgggaucgGGUCGGCGGccCCg -3'
miRNA:   3'- -AGGUCaaGGC-CUG-------------UCGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 141133 0.67 0.971054
Target:  5'- cCCGGcUCCGaGucgccgaAGCCGGCGGaUCCc -3'
miRNA:   3'- aGGUCaAGGC-Cug-----UCGGUUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 112287 0.67 0.971054
Target:  5'- cUCC-GUgUCGGGCGGCCcccCGGgUCCg -3'
miRNA:   3'- -AGGuCAaGGCCUGUCGGuu-GCCaAGG- -5'
10719 3' -54 NC_002794.1 + 83410 0.67 0.971054
Target:  5'- aCCAGaucUUCCGGAUgcuGGCCGGCaagccGGUcaccggcaUCCa -3'
miRNA:   3'- aGGUC---AAGGCCUG---UCGGUUG-----CCA--------AGG- -5'
10719 3' -54 NC_002794.1 + 87348 0.67 0.971054
Target:  5'- cCCAGcagcgggUCCGG-CGGCgAGCGGcgUUCUg -3'
miRNA:   3'- aGGUCa------AGGCCuGUCGgUUGCC--AAGG- -5'
10719 3' -54 NC_002794.1 + 87036 0.67 0.971054
Target:  5'- aUCCGGggaCCGGcGCGGCU--CGGggCCg -3'
miRNA:   3'- -AGGUCaa-GGCC-UGUCGGuuGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 18691 0.67 0.971054
Target:  5'- gCCGucUCCGGcACGGCggCGGCGG-UCCg -3'
miRNA:   3'- aGGUcaAGGCC-UGUCG--GUUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 129497 0.67 0.967218
Target:  5'- aUCCGGUUUccgugucgccgccgCGGuCGGCgCGcugacACGGUUCCu -3'
miRNA:   3'- -AGGUCAAG--------------GCCuGUCG-GU-----UGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 115036 0.67 0.96501
Target:  5'- gUCUgcaGGUgcgaCCGGGCGGCgGGCGGcagcgccgUCCa -3'
miRNA:   3'- -AGG---UCAa---GGCCUGUCGgUUGCCa-------AGG- -5'
10719 3' -54 NC_002794.1 + 156205 0.67 0.961678
Target:  5'- gCCGGUcggagggCCGGcgACuccGCCGGCGGcUCCg -3'
miRNA:   3'- aGGUCAa------GGCC--UGu--CGGUUGCCaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.