miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 184903 0.68 0.95038
Target:  5'- cCCGGgcacucgCgCGGgaacaucgGCAGCCGGCGGUcgUCCu -3'
miRNA:   3'- aGGUCaa-----G-GCC--------UGUCGGUUGCCA--AGG- -5'
10719 3' -54 NC_002794.1 + 64830 0.68 0.946167
Target:  5'- gCCGGcgccgacgaCCGGACGGCgCGGCGGcaCCu -3'
miRNA:   3'- aGGUCaa-------GGCCUGUCG-GUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 145075 0.68 0.95038
Target:  5'- -gCGGggCCGGACAGCaCGguguugaaccggACGG-UCCu -3'
miRNA:   3'- agGUCaaGGCCUGUCG-GU------------UGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 29197 0.69 0.915458
Target:  5'- aCCAGUccguccgUCCGG-CGGUCGGCGGccgucggCCg -3'
miRNA:   3'- aGGUCA-------AGGCCuGUCGGUUGCCaa-----GG- -5'
10719 3' -54 NC_002794.1 + 27617 0.69 0.915458
Target:  5'- cCCGGUcggacggCCGGuCGGUCAAgcgaucagucgacCGGUUCCg -3'
miRNA:   3'- aGGUCAa------GGCCuGUCGGUU-------------GCCAAGG- -5'
10719 3' -54 NC_002794.1 + 60620 0.69 0.910193
Target:  5'- -gCAGaaCCGGACGggcggacccggcGCCGGCGGcgCCg -3'
miRNA:   3'- agGUCaaGGCCUGU------------CGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 192618 0.69 0.916031
Target:  5'- gCCAGgUgCGGACAGUCgGGCGGccgcUCCa -3'
miRNA:   3'- aGGUCaAgGCCUGUCGG-UUGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86270 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86126 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86318 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86462 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86630 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 68292 0.69 0.918302
Target:  5'- gCCGGgcguacgaacgccUCGuGGCGGCCGACGcGUUCCg -3'
miRNA:   3'- aGGUCaa-----------GGC-CUGUCGGUUGC-CAAGG- -5'
10719 3' -54 NC_002794.1 + 33853 0.69 0.921637
Target:  5'- aCCAG--CCGGcacgagcucaACAGCCAGCGGaUCg -3'
miRNA:   3'- aGGUCaaGGCC----------UGUCGGUUGCCaAGg -5'
10719 3' -54 NC_002794.1 + 51744 0.69 0.927009
Target:  5'- cUCGGaggUCCGGcagACGGCCAACauGUUCCu -3'
miRNA:   3'- aGGUCa--AGGCC---UGUCGGUUGc-CAAGG- -5'
10719 3' -54 NC_002794.1 + 80415 0.7 0.877592
Target:  5'- cCCAGguggcgCCGGGCGgggccgccGCCGGCGGccgCCg -3'
miRNA:   3'- aGGUCaa----GGCCUGU--------CGGUUGCCaa-GG- -5'
10719 3' -54 NC_002794.1 + 44236 0.7 0.884556
Target:  5'- cUCGGUgCCGGGCGGCU--CGGUgCCg -3'
miRNA:   3'- aGGUCAaGGCCUGUCGGuuGCCAaGG- -5'
10719 3' -54 NC_002794.1 + 53080 0.7 0.891303
Target:  5'- gCCAGcUCgCGGcACcgGGCCAacaggaccccgGCGGUUCCg -3'
miRNA:   3'- aGGUCaAG-GCC-UG--UCGGU-----------UGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 182023 0.7 0.891303
Target:  5'- cCCGGcgUCCGGGCcGCCGGCGa--CCa -3'
miRNA:   3'- aGGUCa-AGGCCUGuCGGUUGCcaaGG- -5'
10719 3' -54 NC_002794.1 + 143004 0.7 0.863025
Target:  5'- gCCAGgaacCCGGuCAGCguGCGGUcggCCg -3'
miRNA:   3'- aGGUCaa--GGCCuGUCGguUGCCAa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.