miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 166991 1.12 0.003959
Target:  5'- cUCCAGUUCCGGACAGCCAACGGUUCCu -3'
miRNA:   3'- -AGGUCAAGGCCUGUCGGUUGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 182942 0.8 0.394942
Target:  5'- gUCCGGcgCCGGGCucgAGCCGACGGcggCCg -3'
miRNA:   3'- -AGGUCaaGGCCUG---UCGGUUGCCaa-GG- -5'
10719 3' -54 NC_002794.1 + 179904 0.78 0.456171
Target:  5'- cUCCGGgaaUCCGGAgCGGCUccGACGGUUUCg -3'
miRNA:   3'- -AGGUCa--AGGCCU-GUCGG--UUGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 190606 0.77 0.522153
Target:  5'- cUCCAGgUCCGcGACAGCCGcaGGUUCg -3'
miRNA:   3'- -AGGUCaAGGC-CUGUCGGUugCCAAGg -5'
10719 3' -54 NC_002794.1 + 145563 0.75 0.611673
Target:  5'- aCCGGUUCgCGGACGagcGCCGACGGagcggcggCCg -3'
miRNA:   3'- aGGUCAAG-GCCUGU---CGGUUGCCaa------GG- -5'
10719 3' -54 NC_002794.1 + 94003 0.75 0.642021
Target:  5'- gCCGGcgCCGGcgGCgGGCCGGCGgGUUCCg -3'
miRNA:   3'- aGGUCaaGGCC--UG-UCGGUUGC-CAAGG- -5'
10719 3' -54 NC_002794.1 + 34082 0.75 0.642021
Target:  5'- gCCGGcggCCGGGCAGCCGuCGGgcggCCc -3'
miRNA:   3'- aGGUCaa-GGCCUGUCGGUuGCCaa--GG- -5'
10719 3' -54 NC_002794.1 + 99949 0.73 0.731755
Target:  5'- gUUCGG--CCGGACcGCCGACGGcgCCa -3'
miRNA:   3'- -AGGUCaaGGCCUGuCGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 85980 0.72 0.779063
Target:  5'- aUCGGaccgCCGcGGCcccGCCGACGGUUCCg -3'
miRNA:   3'- aGGUCaa--GGC-CUGu--CGGUUGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 184682 0.72 0.797147
Target:  5'- aCCAGUaCCaGGAC-GCCGGCGGagggucgUCCg -3'
miRNA:   3'- aGGUCAaGG-CCUGuCGGUUGCCa------AGG- -5'
10719 3' -54 NC_002794.1 + 73186 0.72 0.797147
Target:  5'- aCCGGUUCCGGuu--CCAACGGUacUUCa -3'
miRNA:   3'- aGGUCAAGGCCugucGGUUGCCA--AGG- -5'
10719 3' -54 NC_002794.1 + 70210 0.72 0.797147
Target:  5'- aUCCAGcucgcCCGGACGGUCgGGCGGgcggCCg -3'
miRNA:   3'- -AGGUCaa---GGCCUGUCGG-UUGCCaa--GG- -5'
10719 3' -54 NC_002794.1 + 109935 0.72 0.797147
Target:  5'- cCCAGUUCUgggggucagGGAgGGCCGGgGGgUCCa -3'
miRNA:   3'- aGGUCAAGG---------CCUgUCGGUUgCCaAGG- -5'
10719 3' -54 NC_002794.1 + 85721 0.72 0.805974
Target:  5'- -aCGGUUuccgcCCGGACAcacccaaggaccGCCGACGGcUUCCg -3'
miRNA:   3'- agGUCAA-----GGCCUGU------------CGGUUGCC-AAGG- -5'
10719 3' -54 NC_002794.1 + 86414 0.71 0.831501
Target:  5'- aCCGgauGUUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGU---CAAGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86222 0.71 0.831501
Target:  5'- aCCGgauGUUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGU---CAAGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86582 0.71 0.839665
Target:  5'- aCCGGauuUUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUC---AAGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 123844 0.71 0.839665
Target:  5'- aUCCGGaugCCGGGCgucAGCCAcgugcucgccgaGCGGgUCCa -3'
miRNA:   3'- -AGGUCaa-GGCCUG---UCGGU------------UGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 10349 0.71 0.839665
Target:  5'- aCCGGgugaCGGACuGCuCGACGGUggaUCCg -3'
miRNA:   3'- aGGUCaag-GCCUGuCG-GUUGCCA---AGG- -5'
10719 3' -54 NC_002794.1 + 143004 0.7 0.863025
Target:  5'- gCCAGgaacCCGGuCAGCguGCGGUcggCCg -3'
miRNA:   3'- aGGUCaa--GGCCuGUCGguUGCCAa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.