miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 147152 0.68 0.937053
Target:  5'- cCCGGggCCGcGAgGGCCAGCuGgaCCg -3'
miRNA:   3'- aGGUCaaGGC-CUgUCGGUUGcCaaGG- -5'
10719 3' -54 NC_002794.1 + 23283 0.68 0.941268
Target:  5'- gUCCaAGUUCUGGACgauauucacacagAGCCAccCGGgUCCc -3'
miRNA:   3'- -AGG-UCAAGGCCUG-------------UCGGUu-GCCaAGG- -5'
10719 3' -54 NC_002794.1 + 67777 0.68 0.941725
Target:  5'- gCCAGc-UCGGACucGGCCGGCGaUUCCu -3'
miRNA:   3'- aGGUCaaGGCCUG--UCGGUUGCcAAGG- -5'
10719 3' -54 NC_002794.1 + 78213 0.68 0.943529
Target:  5'- -aCGGUccUCCGGGCcgagaggcucucucuAGCCAgACGGcUCCa -3'
miRNA:   3'- agGUCA--AGGCCUG---------------UCGGU-UGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 64830 0.68 0.946167
Target:  5'- gCCGGcgccgacgaCCGGACGGCgCGGCGGcaCCu -3'
miRNA:   3'- aGGUCaa-------GGCCUGUCG-GUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 145075 0.68 0.95038
Target:  5'- -gCGGggCCGGACAGCaCGguguugaaccggACGG-UCCu -3'
miRNA:   3'- agGUCaaGGCCUGUCG-GU------------UGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 53034 0.68 0.95038
Target:  5'- cUCCAGgUCCGuGguGCCG-CGGcUCCa -3'
miRNA:   3'- -AGGUCaAGGCcUguCGGUuGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 184903 0.68 0.95038
Target:  5'- cCCGGgcacucgCgCGGgaacaucgGCAGCCGGCGGUcgUCCu -3'
miRNA:   3'- aGGUCaa-----G-GCC--------UGUCGGUUGCCA--AGG- -5'
10719 3' -54 NC_002794.1 + 107516 0.67 0.954367
Target:  5'- gCCGGUcgacgCC-GACGGCCGgcGCGGcgCCg -3'
miRNA:   3'- aGGUCAa----GGcCUGUCGGU--UGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 53295 0.67 0.954367
Target:  5'- cUCCAGgugCCGaGCGGUCGGcCGGcgCCg -3'
miRNA:   3'- -AGGUCaa-GGCcUGUCGGUU-GCCaaGG- -5'
10719 3' -54 NC_002794.1 + 66008 0.67 0.954367
Target:  5'- cCCGGcaCCGaGGCGGCCG-CGGUcgucgCCg -3'
miRNA:   3'- aGGUCaaGGC-CUGUCGGUuGCCAa----GG- -5'
10719 3' -54 NC_002794.1 + 153123 0.67 0.954367
Target:  5'- uUCgGGUUCgGuGGCGG-CAGCGGgUCCg -3'
miRNA:   3'- -AGgUCAAGgC-CUGUCgGUUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 112227 0.67 0.956652
Target:  5'- cUCCAGggcgUCCaGGGCcgccgcgaacgccGCCGGCGGgaCCg -3'
miRNA:   3'- -AGGUCa---AGG-CCUGu------------CGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 86991 0.67 0.958131
Target:  5'- gUCCGGcggcUUUCGG-CGG-CGugGGUUCCg -3'
miRNA:   3'- -AGGUC----AAGGCCuGUCgGUugCCAAGG- -5'
10719 3' -54 NC_002794.1 + 142036 0.67 0.958131
Target:  5'- gCCuGUcgCgGGACcguaCCGGCGGUUCCg -3'
miRNA:   3'- aGGuCAa-GgCCUGuc--GGUUGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 61819 0.67 0.958131
Target:  5'- cUCCGGcggccgCCGG-CGGCCGGCGucacUCCg -3'
miRNA:   3'- -AGGUCaa----GGCCuGUCGGUUGCca--AGG- -5'
10719 3' -54 NC_002794.1 + 48810 0.67 0.958131
Target:  5'- gUCCA--UCCGGAuCAGCCAGacGUUUCg -3'
miRNA:   3'- -AGGUcaAGGCCU-GUCGGUUgcCAAGG- -5'
10719 3' -54 NC_002794.1 + 83030 0.67 0.961678
Target:  5'- cCCGGcgCCGGGCGGCacccaCGGCGGa--- -3'
miRNA:   3'- aGGUCaaGGCCUGUCG-----GUUGCCaagg -5'
10719 3' -54 NC_002794.1 + 191517 0.67 0.961678
Target:  5'- gCCAGcgCCGGGCgucGGCCcGCGccUCCc -3'
miRNA:   3'- aGGUCaaGGCCUG---UCGGuUGCcaAGG- -5'
10719 3' -54 NC_002794.1 + 156205 0.67 0.961678
Target:  5'- gCCGGUcggagggCCGGcgACuccGCCGGCGGcUCCg -3'
miRNA:   3'- aGGUCAa------GGCC--UGu--CGGUUGCCaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.