miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 10349 0.71 0.839665
Target:  5'- aCCGGgugaCGGACuGCuCGACGGUggaUCCg -3'
miRNA:   3'- aGGUCaag-GCCUGuCG-GUUGCCA---AGG- -5'
10719 3' -54 NC_002794.1 + 12197 0.66 0.980828
Target:  5'- gCCGGgcgccgCuCGGACGuGCCGGCGGcgUCg -3'
miRNA:   3'- aGGUCaa----G-GCCUGU-CGGUUGCCa-AGg -5'
10719 3' -54 NC_002794.1 + 18691 0.67 0.971054
Target:  5'- gCCGucUCCGGcACGGCggCGGCGG-UCCg -3'
miRNA:   3'- aGGUcaAGGCC-UGUCG--GUUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 23283 0.68 0.941268
Target:  5'- gUCCaAGUUCUGGACgauauucacacagAGCCAccCGGgUCCc -3'
miRNA:   3'- -AGG-UCAAGGCCUG-------------UCGGUu-GCCaAGG- -5'
10719 3' -54 NC_002794.1 + 27617 0.69 0.915458
Target:  5'- cCCGGUcggacggCCGGuCGGUCAAgcgaucagucgacCGGUUCCg -3'
miRNA:   3'- aGGUCAa------GGCCuGUCGGUU-------------GCCAAGG- -5'
10719 3' -54 NC_002794.1 + 29197 0.69 0.915458
Target:  5'- aCCAGUccguccgUCCGG-CGGUCGGCGGccgucggCCg -3'
miRNA:   3'- aGGUCA-------AGGCCuGUCGGUUGCCaa-----GG- -5'
10719 3' -54 NC_002794.1 + 32590 0.66 0.98283
Target:  5'- gCCGGggCCGG--GGCCGGggcCGGggCCg -3'
miRNA:   3'- aGGUCaaGGCCugUCGGUU---GCCaaGG- -5'
10719 3' -54 NC_002794.1 + 33853 0.69 0.921637
Target:  5'- aCCAG--CCGGcacgagcucaACAGCCAGCGGaUCg -3'
miRNA:   3'- aGGUCaaGGCC----------UGUCGGUUGCCaAGg -5'
10719 3' -54 NC_002794.1 + 34082 0.75 0.642021
Target:  5'- gCCGGcggCCGGGCAGCCGuCGGgcggCCc -3'
miRNA:   3'- aGGUCaa-GGCCUGUCGGUuGCCaa--GG- -5'
10719 3' -54 NC_002794.1 + 37867 0.66 0.978657
Target:  5'- cUCCGGUcggcgUCuCGGGCGGCgGggGCGGUggCg -3'
miRNA:   3'- -AGGUCA-----AG-GCCUGUCGgU--UGCCAagG- -5'
10719 3' -54 NC_002794.1 + 44236 0.7 0.884556
Target:  5'- cUCGGUgCCGGGCGGCU--CGGUgCCg -3'
miRNA:   3'- aGGUCAaGGCCUGUCGGuuGCCAaGG- -5'
10719 3' -54 NC_002794.1 + 48810 0.67 0.958131
Target:  5'- gUCCA--UCCGGAuCAGCCAGacGUUUCg -3'
miRNA:   3'- -AGGUcaAGGCCU-GUCGGUUgcCAAGG- -5'
10719 3' -54 NC_002794.1 + 49010 0.66 0.980828
Target:  5'- cUCCcGcgCCGcGGCGGCC-GCGGcgucgUCCg -3'
miRNA:   3'- -AGGuCaaGGC-CUGUCGGuUGCCa----AGG- -5'
10719 3' -54 NC_002794.1 + 51744 0.69 0.927009
Target:  5'- cUCGGaggUCCGGcagACGGCCAACauGUUCCu -3'
miRNA:   3'- aGGUCa--AGGCC---UGUCGGUUGc-CAAGG- -5'
10719 3' -54 NC_002794.1 + 53034 0.68 0.95038
Target:  5'- cUCCAGgUCCGuGguGCCG-CGGcUCCa -3'
miRNA:   3'- -AGGUCaAGGCcUguCGGUuGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 53080 0.7 0.891303
Target:  5'- gCCAGcUCgCGGcACcgGGCCAacaggaccccgGCGGUUCCg -3'
miRNA:   3'- aGGUCaAG-GCC-UG--UCGGU-----------UGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 53295 0.67 0.954367
Target:  5'- cUCCAGgugCCGaGCGGUCGGcCGGcgCCg -3'
miRNA:   3'- -AGGUCaa-GGCcUGUCGGUU-GCCaaGG- -5'
10719 3' -54 NC_002794.1 + 60620 0.69 0.910193
Target:  5'- -gCAGaaCCGGACGggcggacccggcGCCGGCGGcgCCg -3'
miRNA:   3'- agGUCaaGGCCUGU------------CGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 61819 0.67 0.958131
Target:  5'- cUCCGGcggccgCCGG-CGGCCGGCGucacUCCg -3'
miRNA:   3'- -AGGUCaa----GGCCuGUCGGUUGCca--AGG- -5'
10719 3' -54 NC_002794.1 + 64830 0.68 0.946167
Target:  5'- gCCGGcgccgacgaCCGGACGGCgCGGCGGcaCCu -3'
miRNA:   3'- aGGUCaa-------GGCCUGUCG-GUUGCCaaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.