miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 86582 0.71 0.839665
Target:  5'- aCCGGauuUUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUC---AAGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86630 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86817 0.66 0.973513
Target:  5'- aUCCAGggCCGcGACcucgccgggaucgGGUCGGCGGccCCg -3'
miRNA:   3'- -AGGUCaaGGC-CUG-------------UCGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 86991 0.67 0.958131
Target:  5'- gUCCGGcggcUUUCGG-CGG-CGugGGUUCCg -3'
miRNA:   3'- -AGGUC----AAGGCCuGUCgGUugCCAAGG- -5'
10719 3' -54 NC_002794.1 + 87036 0.67 0.971054
Target:  5'- aUCCGGggaCCGGcGCGGCU--CGGggCCg -3'
miRNA:   3'- -AGGUCaa-GGCC-UGUCGGuuGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 87348 0.67 0.971054
Target:  5'- cCCAGcagcgggUCCGG-CGGCgAGCGGcgUUCUg -3'
miRNA:   3'- aGGUCa------AGGCCuGUCGgUUGCC--AAGG- -5'
10719 3' -54 NC_002794.1 + 94003 0.75 0.642021
Target:  5'- gCCGGcgCCGGcgGCgGGCCGGCGgGUUCCg -3'
miRNA:   3'- aGGUCaaGGCC--UG-UCGGUUGC-CAAGG- -5'
10719 3' -54 NC_002794.1 + 99949 0.73 0.731755
Target:  5'- gUUCGG--CCGGACcGCCGACGGcgCCa -3'
miRNA:   3'- -AGGUCaaGGCCUGuCGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 102708 0.66 0.973777
Target:  5'- gCCGGgccgCCGGACGggcgcGCCAACGcg-CCc -3'
miRNA:   3'- aGGUCaa--GGCCUGU-----CGGUUGCcaaGG- -5'
10719 3' -54 NC_002794.1 + 107516 0.67 0.954367
Target:  5'- gCCGGUcgacgCC-GACGGCCGgcGCGGcgCCg -3'
miRNA:   3'- aGGUCAa----GGcCUGUCGGU--UGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 109935 0.72 0.797147
Target:  5'- cCCAGUUCUgggggucagGGAgGGCCGGgGGgUCCa -3'
miRNA:   3'- aGGUCAAGG---------CCUgUCGGUUgCCaAGG- -5'
10719 3' -54 NC_002794.1 + 112227 0.67 0.956652
Target:  5'- cUCCAGggcgUCCaGGGCcgccgcgaacgccGCCGGCGGgaCCg -3'
miRNA:   3'- -AGGUCa---AGG-CCUGu------------CGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 112287 0.67 0.971054
Target:  5'- cUCC-GUgUCGGGCGGCCcccCGGgUCCg -3'
miRNA:   3'- -AGGuCAaGGCCUGUCGGuu-GCCaAGG- -5'
10719 3' -54 NC_002794.1 + 115036 0.67 0.96501
Target:  5'- gUCUgcaGGUgcgaCCGGGCGGCgGGCGGcagcgccgUCCa -3'
miRNA:   3'- -AGG---UCAa---GGCCUGUCGgUUGCCa-------AGG- -5'
10719 3' -54 NC_002794.1 + 119765 0.68 0.932148
Target:  5'- aCCAGgUCgCGGcCGGCCuccaGGCGGcUCCg -3'
miRNA:   3'- aGGUCaAG-GCCuGUCGG----UUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 123844 0.71 0.839665
Target:  5'- aUCCGGaugCCGGGCgucAGCCAcgugcucgccgaGCGGgUCCa -3'
miRNA:   3'- -AGGUCaa-GGCCUG---UCGGU------------UGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 129497 0.67 0.967218
Target:  5'- aUCCGGUUUccgugucgccgccgCGGuCGGCgCGcugacACGGUUCCu -3'
miRNA:   3'- -AGGUCAAG--------------GCCuGUCG-GU-----UGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 136727 0.66 0.978657
Target:  5'- cCCGGcgUCCaGGCGGUCGA-GGUUCg -3'
miRNA:   3'- aGGUCa-AGGcCUGUCGGUUgCCAAGg -5'
10719 3' -54 NC_002794.1 + 141133 0.67 0.971054
Target:  5'- cCCGGcUCCGaGucgccgaAGCCGGCGGaUCCc -3'
miRNA:   3'- aGGUCaAGGC-Cug-----UCGGUUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 142036 0.67 0.958131
Target:  5'- gCCuGUcgCgGGACcguaCCGGCGGUUCCg -3'
miRNA:   3'- aGGuCAa-GgCCUGuc--GGUUGCCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.