miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 143004 0.7 0.863025
Target:  5'- gCCAGgaacCCGGuCAGCguGCGGUcggCCg -3'
miRNA:   3'- aGGUCaa--GGCCuGUCGguUGCCAa--GG- -5'
10719 3' -54 NC_002794.1 + 143799 0.66 0.973777
Target:  5'- aCCAGgUCgCGuACAcGCCGuCGGUUCCc -3'
miRNA:   3'- aGGUCaAG-GCcUGU-CGGUuGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 145075 0.68 0.95038
Target:  5'- -gCGGggCCGGACAGCaCGguguugaaccggACGG-UCCu -3'
miRNA:   3'- agGUCaaGGCCUGUCG-GU------------UGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 145563 0.75 0.611673
Target:  5'- aCCGGUUCgCGGACGagcGCCGACGGagcggcggCCg -3'
miRNA:   3'- aGGUCAAG-GCCUGU---CGGUUGCCaa------GG- -5'
10719 3' -54 NC_002794.1 + 147152 0.68 0.937053
Target:  5'- cCCGGggCCGcGAgGGCCAGCuGgaCCg -3'
miRNA:   3'- aGGUCaaGGC-CUgUCGGUUGcCaaGG- -5'
10719 3' -54 NC_002794.1 + 153123 0.67 0.954367
Target:  5'- uUCgGGUUCgGuGGCGG-CAGCGGgUCCg -3'
miRNA:   3'- -AGgUCAAGgC-CUGUCgGUUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 156205 0.67 0.961678
Target:  5'- gCCGGUcggagggCCGGcgACuccGCCGGCGGcUCCg -3'
miRNA:   3'- aGGUCAa------GGCC--UGu--CGGUUGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 166991 1.12 0.003959
Target:  5'- cUCCAGUUCCGGACAGCCAACGGUUCCu -3'
miRNA:   3'- -AGGUCAAGGCCUGUCGGUUGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 168838 0.7 0.891303
Target:  5'- --uGGUUCUccuguGGGCAGCUugUGGUUCCg -3'
miRNA:   3'- aggUCAAGG-----CCUGUCGGuuGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 179904 0.78 0.456171
Target:  5'- cUCCGGgaaUCCGGAgCGGCUccGACGGUUUCg -3'
miRNA:   3'- -AGGUCa--AGGCCU-GUCGG--UUGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 182023 0.7 0.891303
Target:  5'- cCCGGcgUCCGGGCcGCCGGCGa--CCa -3'
miRNA:   3'- aGGUCa-AGGCCUGuCGGUUGCcaaGG- -5'
10719 3' -54 NC_002794.1 + 182942 0.8 0.394942
Target:  5'- gUCCGGcgCCGGGCucgAGCCGACGGcggCCg -3'
miRNA:   3'- -AGGUCaaGGCCUG---UCGGUUGCCaa-GG- -5'
10719 3' -54 NC_002794.1 + 184605 0.68 0.932148
Target:  5'- -gCGGgaUCGGcaACGGCCAGCGGcagcgUCCa -3'
miRNA:   3'- agGUCaaGGCC--UGUCGGUUGCCa----AGG- -5'
10719 3' -54 NC_002794.1 + 184682 0.72 0.797147
Target:  5'- aCCAGUaCCaGGAC-GCCGGCGGagggucgUCCg -3'
miRNA:   3'- aGGUCAaGG-CCUGuCGGUUGCCa------AGG- -5'
10719 3' -54 NC_002794.1 + 184741 0.66 0.976309
Target:  5'- gCCAGgUCCGcGcCGGuCCAGC-GUUCCa -3'
miRNA:   3'- aGGUCaAGGC-CuGUC-GGUUGcCAAGG- -5'
10719 3' -54 NC_002794.1 + 184903 0.68 0.95038
Target:  5'- cCCGGgcacucgCgCGGgaacaucgGCAGCCGGCGGUcgUCCu -3'
miRNA:   3'- aGGUCaa-----G-GCC--------UGUCGGUUGCCA--AGG- -5'
10719 3' -54 NC_002794.1 + 189944 0.67 0.961678
Target:  5'- gCCgauGGacCCGGACGGaCCGACGGacgggCCg -3'
miRNA:   3'- aGG---UCaaGGCCUGUC-GGUUGCCaa---GG- -5'
10719 3' -54 NC_002794.1 + 190606 0.77 0.522153
Target:  5'- cUCCAGgUCCGcGACAGCCGcaGGUUCg -3'
miRNA:   3'- -AGGUCaAGGC-CUGUCGGUugCCAAGg -5'
10719 3' -54 NC_002794.1 + 191517 0.67 0.961678
Target:  5'- gCCAGcgCCGGGCgucGGCCcGCGccUCCc -3'
miRNA:   3'- aGGUCaaGGCCUG---UCGGuUGCcaAGG- -5'
10719 3' -54 NC_002794.1 + 192618 0.69 0.916031
Target:  5'- gCCAGgUgCGGACAGUCgGGCGGccgcUCCa -3'
miRNA:   3'- aGGUCaAgGCCUGUCGG-UUGCCa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.