miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 3' -54 NC_002794.1 + 86462 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86414 0.71 0.831501
Target:  5'- aCCGgauGUUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGU---CAAGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86318 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86270 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86222 0.71 0.831501
Target:  5'- aCCGgauGUUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGU---CAAGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 86126 0.69 0.916031
Target:  5'- aCCGGaugcUCCGGACcgAGCCGggACGGaugcUCCg -3'
miRNA:   3'- aGGUCa---AGGCCUG--UCGGU--UGCCa---AGG- -5'
10719 3' -54 NC_002794.1 + 85980 0.72 0.779063
Target:  5'- aUCGGaccgCCGcGGCcccGCCGACGGUUCCg -3'
miRNA:   3'- aGGUCaa--GGC-CUGu--CGGUUGCCAAGG- -5'
10719 3' -54 NC_002794.1 + 85721 0.72 0.805974
Target:  5'- -aCGGUUuccgcCCGGACAcacccaaggaccGCCGACGGcUUCCg -3'
miRNA:   3'- agGUCAA-----GGCCUGU------------CGGUUGCC-AAGG- -5'
10719 3' -54 NC_002794.1 + 83410 0.67 0.971054
Target:  5'- aCCAGaucUUCCGGAUgcuGGCCGGCaagccGGUcaccggcaUCCa -3'
miRNA:   3'- aGGUC---AAGGCCUG---UCGGUUG-----CCA--------AGG- -5'
10719 3' -54 NC_002794.1 + 83030 0.67 0.961678
Target:  5'- cCCGGcgCCGGGCGGCacccaCGGCGGa--- -3'
miRNA:   3'- aGGUCaaGGCCUGUCG-----GUUGCCaagg -5'
10719 3' -54 NC_002794.1 + 80415 0.7 0.877592
Target:  5'- cCCAGguggcgCCGGGCGgggccgccGCCGGCGGccgCCg -3'
miRNA:   3'- aGGUCaa----GGCCUGU--------CGGUUGCCaa-GG- -5'
10719 3' -54 NC_002794.1 + 78213 0.68 0.943529
Target:  5'- -aCGGUccUCCGGGCcgagaggcucucucuAGCCAgACGGcUCCa -3'
miRNA:   3'- agGUCA--AGGCCUG---------------UCGGU-UGCCaAGG- -5'
10719 3' -54 NC_002794.1 + 76813 0.68 0.937053
Target:  5'- aCCGGa-CCGGACGucacGCCAGCGG--CCg -3'
miRNA:   3'- aGGUCaaGGCCUGU----CGGUUGCCaaGG- -5'
10719 3' -54 NC_002794.1 + 73186 0.72 0.797147
Target:  5'- aCCGGUUCCGGuu--CCAACGGUacUUCa -3'
miRNA:   3'- aGGUCAAGGCCugucGGUUGCCA--AGG- -5'
10719 3' -54 NC_002794.1 + 72264 0.66 0.980828
Target:  5'- cCCAGUUCCgcgcGGAagaAGCCGcgaaaGCGGgcgaucgcgUCCc -3'
miRNA:   3'- aGGUCAAGG----CCUg--UCGGU-----UGCCa--------AGG- -5'
10719 3' -54 NC_002794.1 + 70210 0.72 0.797147
Target:  5'- aUCCAGcucgcCCGGACGGUCgGGCGGgcggCCg -3'
miRNA:   3'- -AGGUCaa---GGCCUGUCGG-UUGCCaa--GG- -5'
10719 3' -54 NC_002794.1 + 68292 0.69 0.918302
Target:  5'- gCCGGgcguacgaacgccUCGuGGCGGCCGACGcGUUCCg -3'
miRNA:   3'- aGGUCaa-----------GGC-CUGUCGGUUGC-CAAGG- -5'
10719 3' -54 NC_002794.1 + 67777 0.68 0.941725
Target:  5'- gCCAGc-UCGGACucGGCCGGCGaUUCCu -3'
miRNA:   3'- aGGUCaaGGCCUG--UCGGUUGCcAAGG- -5'
10719 3' -54 NC_002794.1 + 67220 0.66 0.976309
Target:  5'- cUCGGcgCCGGGCGGCUAAcCGcGUcucgauUCCg -3'
miRNA:   3'- aGGUCaaGGCCUGUCGGUU-GC-CA------AGG- -5'
10719 3' -54 NC_002794.1 + 66008 0.67 0.954367
Target:  5'- cCCGGcaCCGaGGCGGCCG-CGGUcgucgCCg -3'
miRNA:   3'- aGGUCaaGGC-CUGUCGGUuGCCAa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.