Results 61 - 80 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10719 | 3' | -54 | NC_002794.1 | + | 64830 | 0.68 | 0.946167 |
Target: 5'- gCCGGcgccgacgaCCGGACGGCgCGGCGGcaCCu -3' miRNA: 3'- aGGUCaa-------GGCCUGUCG-GUUGCCaaGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 61819 | 0.67 | 0.958131 |
Target: 5'- cUCCGGcggccgCCGG-CGGCCGGCGucacUCCg -3' miRNA: 3'- -AGGUCaa----GGCCuGUCGGUUGCca--AGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 60620 | 0.69 | 0.910193 |
Target: 5'- -gCAGaaCCGGACGggcggacccggcGCCGGCGGcgCCg -3' miRNA: 3'- agGUCaaGGCCUGU------------CGGUUGCCaaGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 53295 | 0.67 | 0.954367 |
Target: 5'- cUCCAGgugCCGaGCGGUCGGcCGGcgCCg -3' miRNA: 3'- -AGGUCaa-GGCcUGUCGGUU-GCCaaGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 53080 | 0.7 | 0.891303 |
Target: 5'- gCCAGcUCgCGGcACcgGGCCAacaggaccccgGCGGUUCCg -3' miRNA: 3'- aGGUCaAG-GCC-UG--UCGGU-----------UGCCAAGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 53034 | 0.68 | 0.95038 |
Target: 5'- cUCCAGgUCCGuGguGCCG-CGGcUCCa -3' miRNA: 3'- -AGGUCaAGGCcUguCGGUuGCCaAGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 51744 | 0.69 | 0.927009 |
Target: 5'- cUCGGaggUCCGGcagACGGCCAACauGUUCCu -3' miRNA: 3'- aGGUCa--AGGCC---UGUCGGUUGc-CAAGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 49010 | 0.66 | 0.980828 |
Target: 5'- cUCCcGcgCCGcGGCGGCC-GCGGcgucgUCCg -3' miRNA: 3'- -AGGuCaaGGC-CUGUCGGuUGCCa----AGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 48810 | 0.67 | 0.958131 |
Target: 5'- gUCCA--UCCGGAuCAGCCAGacGUUUCg -3' miRNA: 3'- -AGGUcaAGGCCU-GUCGGUUgcCAAGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 44236 | 0.7 | 0.884556 |
Target: 5'- cUCGGUgCCGGGCGGCU--CGGUgCCg -3' miRNA: 3'- aGGUCAaGGCCUGUCGGuuGCCAaGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 37867 | 0.66 | 0.978657 |
Target: 5'- cUCCGGUcggcgUCuCGGGCGGCgGggGCGGUggCg -3' miRNA: 3'- -AGGUCA-----AG-GCCUGUCGgU--UGCCAagG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 34082 | 0.75 | 0.642021 |
Target: 5'- gCCGGcggCCGGGCAGCCGuCGGgcggCCc -3' miRNA: 3'- aGGUCaa-GGCCUGUCGGUuGCCaa--GG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 33853 | 0.69 | 0.921637 |
Target: 5'- aCCAG--CCGGcacgagcucaACAGCCAGCGGaUCg -3' miRNA: 3'- aGGUCaaGGCC----------UGUCGGUUGCCaAGg -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 32590 | 0.66 | 0.98283 |
Target: 5'- gCCGGggCCGG--GGCCGGggcCGGggCCg -3' miRNA: 3'- aGGUCaaGGCCugUCGGUU---GCCaaGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 29197 | 0.69 | 0.915458 |
Target: 5'- aCCAGUccguccgUCCGG-CGGUCGGCGGccgucggCCg -3' miRNA: 3'- aGGUCA-------AGGCCuGUCGGUUGCCaa-----GG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 27617 | 0.69 | 0.915458 |
Target: 5'- cCCGGUcggacggCCGGuCGGUCAAgcgaucagucgacCGGUUCCg -3' miRNA: 3'- aGGUCAa------GGCCuGUCGGUU-------------GCCAAGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 23283 | 0.68 | 0.941268 |
Target: 5'- gUCCaAGUUCUGGACgauauucacacagAGCCAccCGGgUCCc -3' miRNA: 3'- -AGG-UCAAGGCCUG-------------UCGGUu-GCCaAGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 18691 | 0.67 | 0.971054 |
Target: 5'- gCCGucUCCGGcACGGCggCGGCGG-UCCg -3' miRNA: 3'- aGGUcaAGGCC-UGUCG--GUUGCCaAGG- -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 12197 | 0.66 | 0.980828 |
Target: 5'- gCCGGgcgccgCuCGGACGuGCCGGCGGcgUCg -3' miRNA: 3'- aGGUCaa----G-GCCUGU-CGGUUGCCa-AGg -5' |
|||||||
10719 | 3' | -54 | NC_002794.1 | + | 10349 | 0.71 | 0.839665 |
Target: 5'- aCCGGgugaCGGACuGCuCGACGGUggaUCCg -3' miRNA: 3'- aGGUCaag-GCCUGuCG-GUUGCCA---AGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home