Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10719 | 3' | -54 | NC_002794.1 | + | 136727 | 0.66 | 0.978657 |
Target: 5'- cCCGGcgUCCaGGCGGUCGA-GGUUCg -3' miRNA: 3'- aGGUCa-AGGcCUGUCGGUUgCCAAGg -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 37867 | 0.66 | 0.978657 |
Target: 5'- cUCCGGUcggcgUCuCGGGCGGCgGggGCGGUggCg -3' miRNA: 3'- -AGGUCA-----AG-GCCUGUCGgU--UGCCAagG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 49010 | 0.66 | 0.980828 |
Target: 5'- cUCCcGcgCCGcGGCGGCC-GCGGcgucgUCCg -3' miRNA: 3'- -AGGuCaaGGC-CUGUCGGuUGCCa----AGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 12197 | 0.66 | 0.980828 |
Target: 5'- gCCGGgcgccgCuCGGACGuGCCGGCGGcgUCg -3' miRNA: 3'- aGGUCaa----G-GCCUGU-CGGUUGCCa-AGg -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 32590 | 0.66 | 0.98283 |
Target: 5'- gCCGGggCCGG--GGCCGGggcCGGggCCg -3' miRNA: 3'- aGGUCaaGGCCugUCGGUU---GCCaaGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 87348 | 0.67 | 0.971054 |
Target: 5'- cCCAGcagcgggUCCGG-CGGCgAGCGGcgUUCUg -3' miRNA: 3'- aGGUCa------AGGCCuGUCGgUUGCC--AAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 83410 | 0.67 | 0.971054 |
Target: 5'- aCCAGaucUUCCGGAUgcuGGCCGGCaagccGGUcaccggcaUCCa -3' miRNA: 3'- aGGUC---AAGGCCUG---UCGGUUG-----CCA--------AGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 48810 | 0.67 | 0.958131 |
Target: 5'- gUCCA--UCCGGAuCAGCCAGacGUUUCg -3' miRNA: 3'- -AGGUcaAGGCCU-GUCGGUUgcCAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 112227 | 0.67 | 0.956652 |
Target: 5'- cUCCAGggcgUCCaGGGCcgccgcgaacgccGCCGGCGGgaCCg -3' miRNA: 3'- -AGGUCa---AGG-CCUGu------------CGGUUGCCaaGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 153123 | 0.67 | 0.954367 |
Target: 5'- uUCgGGUUCgGuGGCGG-CAGCGGgUCCg -3' miRNA: 3'- -AGgUCAAGgC-CUGUCgGUUGCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 61819 | 0.67 | 0.958131 |
Target: 5'- cUCCGGcggccgCCGG-CGGCCGGCGucacUCCg -3' miRNA: 3'- -AGGUCaa----GGCCuGUCGGUUGCca--AGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 142036 | 0.67 | 0.958131 |
Target: 5'- gCCuGUcgCgGGACcguaCCGGCGGUUCCg -3' miRNA: 3'- aGGuCAa-GgCCUGuc--GGUUGCCAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 86991 | 0.67 | 0.958131 |
Target: 5'- gUCCGGcggcUUUCGG-CGG-CGugGGUUCCg -3' miRNA: 3'- -AGGUC----AAGGCCuGUCgGUugCCAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 83030 | 0.67 | 0.961678 |
Target: 5'- cCCGGcgCCGGGCGGCacccaCGGCGGa--- -3' miRNA: 3'- aGGUCaaGGCCUGUCG-----GUUGCCaagg -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 191517 | 0.67 | 0.961678 |
Target: 5'- gCCAGcgCCGGGCgucGGCCcGCGccUCCc -3' miRNA: 3'- aGGUCaaGGCCUG---UCGGuUGCcaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 156205 | 0.67 | 0.961678 |
Target: 5'- gCCGGUcggagggCCGGcgACuccGCCGGCGGcUCCg -3' miRNA: 3'- aGGUCAa------GGCC--UGu--CGGUUGCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 129497 | 0.67 | 0.967218 |
Target: 5'- aUCCGGUUUccgugucgccgccgCGGuCGGCgCGcugacACGGUUCCu -3' miRNA: 3'- -AGGUCAAG--------------GCCuGUCG-GU-----UGCCAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 115036 | 0.67 | 0.96501 |
Target: 5'- gUCUgcaGGUgcgaCCGGGCGGCgGGCGGcagcgccgUCCa -3' miRNA: 3'- -AGG---UCAa---GGCCUGUCGgUUGCCa-------AGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 189944 | 0.67 | 0.961678 |
Target: 5'- gCCgauGGacCCGGACGGaCCGACGGacgggCCg -3' miRNA: 3'- aGG---UCaaGGCCUGUC-GGUUGCCaa---GG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 112287 | 0.67 | 0.971054 |
Target: 5'- cUCC-GUgUCGGGCGGCCcccCGGgUCCg -3' miRNA: 3'- -AGGuCAaGGCCUGUCGGuu-GCCaAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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